Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_I02
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   1.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.2  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   2.9  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    26   3.8  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.0  

>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 104 TGKLLLSGQTYDYNNVVRKVHEQSVEANAIPLFKRVQEVFFEFPQPEQKI 253
           TG  LLSG   D    V  + ++S     IP+F  V+ + +   QPE+KI
Sbjct: 200 TGSFLLSGSR-DKTVQVWNIKKRSA-VRTIPVFHSVEAIGWVNGQPEEKI 247


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 472  FAYNVLKTKTYKQFARLQLISQTLFSRVYFD--NKLEAGSSIALQFDVDEVKAQSSSGD 302
            F +N      YK   R+      + + + FD  N+L++G+  A+ +D+  +++  S  D
Sbjct: 1912 FVFNCDNAFNYKTIQRILSGLAQIGTYICFDEFNRLDSGTLSAISYDIQRIQSLVSHSD 1970



 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 152  VRKVHEQSVEANAIPLFKRVQEVFFEFP 235
            +R+V   S+    IPLF + +E +F FP
Sbjct: 2094 IREVLYPSLIYQDIPLFFKAEESYFNFP 2121


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 508 FTLFKSLIKISKFAYNVLKTKTYKQFARLQLISQTLFSRV 389
           F L ++L++ +K+  + +  K Y    RL ++  TL+ R+
Sbjct: 11  FVLNRNLLEANKYKLSEITFKVYISIRRLLIVVITLYRRI 50


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +2

Query: 104 TGKLLLS---GQTYDYNNVVRKVHEQSVEANAIPLFKRV 211
           TGK+L +   G  ++  +V+R V ++ +   A+PL KR+
Sbjct: 281 TGKVLSATWKGTRFEVQSVIRTVSDKILYDKAVPLEKRI 319


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 427 RLQLISQTLFSRVYFDNKLEAGSSIALQFDVDEVKAQSS 311
           R QLI QT+ S +    +     +IA QFD+ +V A ++
Sbjct: 795 REQLIEQTVISLISIAKQPVEQKNIAGQFDLPQVHAMNT 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,066
Number of Sequences: 5004
Number of extensions: 38986
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)