Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_I02
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical
           protein F29B9.8 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 3   DQTARSKAYVTLAKGKMSKYLFILFDMCLH 92
           D+  ++  Y  +   K+  +LF+LF +C+H
Sbjct: 275 DEVTKTSPYEHVRNSKLRLFLFLLFSICVH 304


>Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical
           protein R166.5b protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 197 LFKRVQEVFFEFPQPEQKIKGIAIKDLENGL 289
           LF R+Q+ ++EFP+ E  +     KDL + L
Sbjct: 443 LFHRIQDGYYEFPEEEWGMISEEAKDLVSNL 473


>Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical
           protein R166.5a protein.
          Length = 705

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 197 LFKRVQEVFFEFPQPEQKIKGIAIKDLENGL 289
           LF R+Q+ ++EFP+ E  +     KDL + L
Sbjct: 441 LFHRIQDGYYEFPEEEWGMISEEAKDLVSNL 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,016,410
Number of Sequences: 27780
Number of extensions: 223273
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)