Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_I01
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    27   2.0  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   2.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   4.7  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   6.2  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   6.2  

>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 151 KCRVKYLLQINRWLDKTV--LCNHF 219
           KC+ +  + + RW+D+ +  LC HF
Sbjct: 532 KCQTEDEMSVTRWIDRNLIRLCQHF 556


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 237 ITMAYAYWKSGKVMMSLYLIYFSNNPFQVNHYICWIKRMXEILKNFIILQ 386
           +T+   ++K G   +S  L   SN  F  NH+   +KR+   +K +  LQ
Sbjct: 114 LTVGDEFYKDGVNNISSLLTSSSNQRFNDNHHKSIVKRIRHEIKCYNSLQ 163


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 318 GMDCSKNKSNTATSLLFLISNMHTP*LFDKGQLKVV 211
           G+    N SN      FL+ N HT  +F  G +K++
Sbjct: 56  GLSVQLNASNMTDPFKFLLDNWHT--IFKNGAIKLL 89


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -3

Query: 239 YLIKVS*KWLHNTVLSSHLFICNRYFTRHFFLYKVI*FNTNKHV 108
           YL+     W H     S + + N +F   F   K +   T++H+
Sbjct: 6   YLLTSFNLWSHGVYKISSISLSNSFFPHSFMFVKSLHLMTSQHI 49


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 216 LLTDLYQITMAYAYWKSGKVMMSLYLIYFSNNPFQVNHYICWIKR 350
           LL+     T  +A W       ++Y+I     P  + HY+ W+K+
Sbjct: 422 LLSATVPNTKEFASWVGRTKKKNIYVISTLKRPVPLEHYL-WVKQ 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,367
Number of Sequences: 5004
Number of extensions: 30450
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)