Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_I01
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-33|AAP13743.1|  238|Caenorhabditis elegans Hypothetical...    56   2e-08
AC024817-32|AAP13741.1|  543|Caenorhabditis elegans Hypothetical...    56   2e-08
AC024817-31|AAP13742.1|  563|Caenorhabditis elegans Hypothetical...    56   2e-08
AF047658-4|AAC04417.1|  392|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AC024817-33|AAP13743.1|  238|Caenorhabditis elegans Hypothetical
           protein Y54G2A.17c protein.
          Length = 238

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = +3

Query: 186 MARQNGIVQPLLTDLYQITMAYAYWKSG-KVMMSLYLIYFSNNPFQ 320
           M  Q+ +VQPLLTD YQITM YAYWK+G     +++ ++F  NPFQ
Sbjct: 1   MNGQDSLVQPLLTDFYQITMCYAYWKTGTHNEPAVFDVFFRKNPFQ 46


>AC024817-32|AAP13741.1|  543|Caenorhabditis elegans Hypothetical
           protein Y54G2A.17a protein.
          Length = 543

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = +3

Query: 186 MARQNGIVQPLLTDLYQITMAYAYWKSG-KVMMSLYLIYFSNNPFQ 320
           M  Q+ +VQPLLTD YQITM YAYWK+G     +++ ++F  NPFQ
Sbjct: 1   MNGQDSLVQPLLTDFYQITMCYAYWKTGTHNEPAVFDVFFRKNPFQ 46


>AC024817-31|AAP13742.1|  563|Caenorhabditis elegans Hypothetical
           protein Y54G2A.17b protein.
          Length = 563

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
 Frame = +3

Query: 186 MARQNGIVQPLLTDLYQITMAYAYWKSG-KVMMSLYLIYFSNNPFQ 320
           M  Q+ +VQPLLTD YQITM YAYWK+G     +++ ++F  NPFQ
Sbjct: 21  MNGQDSLVQPLLTDFYQITMCYAYWKTGTHNEPAVFDVFFRKNPFQ 66


>AF047658-4|AAC04417.1|  392|Caenorhabditis elegans Hypothetical
           protein K03H6.1 protein.
          Length = 392

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +3

Query: 63  MKLLVLVVVEILNSSDVLV-SVKLNYFV*EKMSSEISIADKQMARQNGIVQPLLTDLYQI 239
           +  L++++   L + D +  +V   YF         ++A+   A    ++  +  + Y I
Sbjct: 81  LAFLLVMLPNCLAAFDTIAYNVSFRYFYLNTKQHMSAVANWMSAAAIWLILAVSIERYLI 140

Query: 240 TM----AYAYWKSGKVMMSLYLIYFSNNPFQVNHYICW 341
                 A  YW+ GK+++ L  I+ +     V H+  W
Sbjct: 141 VRSPFRAKLYWQRGKMVVVLSSIFVTTGLLTVYHHFEW 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,405,795
Number of Sequences: 27780
Number of extensions: 168619
Number of successful extensions: 316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)