Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_H21
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 575 YDTPGRPANASRTAFST 525
           Y + GRP+N  RT+FS+
Sbjct: 13  YLSAGRPSNLLRTSFSS 29


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 364 WPFPRCSEVVPALIPLNKHLAYLLDS 287
           W   R  EV     P  +HL YL+ S
Sbjct: 185 WRAVRTEEVPEDKCPFTEHLGYLIFS 210


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 200 SMTGIPTIPNTYSTPCFFKLS 138
           SM  I  +  TYS  C+F+ S
Sbjct: 40  SMGPISEVDMTYSMDCYFRQS 60


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 434 VASRNGLRWILVACTASMQPGRPPP 508
           +    G   ++V+C    QP RP P
Sbjct: 89  IVGYKGRALVVVSCVTKDQPYRPHP 113


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 434 VASRNGLRWILVACTASMQPGRPPP 508
           +    G   ++V+C    QP RP P
Sbjct: 89  IVGYKGRALVVVSCVTKDQPYRPHP 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,597
Number of Sequences: 438
Number of extensions: 4774
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)