Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_H17
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    29   0.40 
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   2.2  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    25   8.7  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   8.7  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   8.7  

>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 276 LRLQKNLKSAE*NKTQSLMYLYSILDPFCLLVEDWGKGEIGLPSLKQEE 422
           L+L + L  AE +KTQ ++ L S +D      E W K  I   S K +E
Sbjct: 316 LKLMQELIVAESSKTQHIVELESCIDSLKAETERWKKVAINAKSAKIDE 364


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +2

Query: 137 LRWINIKTTLRGVTPKRVPNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQ 316
           L+ + I+ +L G  P  V    +   +++  +  +H+LL + + + L   EK ++   K+
Sbjct: 78  LQQLMIEKSLEGDNPLDVDQGASENIEKETYVQGSHELLVARKKIALYSLEKAKLRLKKE 137

Query: 317 DPIPYVPI 340
             I  +P+
Sbjct: 138 REISEIPV 145


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 516 RVKQRRRQIKEKKFQNELLALVQNAMSS 599
           R + +++++KEKKF+ +LL L +   +S
Sbjct: 217 RREVQKKEMKEKKFEKQLLELRKRTRTS 244


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 384 KGEIGLPSLKQEEIQAAR 437
           + E+GLPS+K E+IQ  +
Sbjct: 357 RAEMGLPSVKNEDIQVQK 374


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +2

Query: 146 INIKTTLRGVTPKRVPNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPI 325
           I+ K   R  TP  + ++IA++ K+K        +   P  V L   E   + R+ Q  I
Sbjct: 130 IDGKKITRPATPAALDSLIASIDKDKGWTGIVDPMTGKP--VNLTTEELGLLKRLAQSEI 187

Query: 326 P 328
           P
Sbjct: 188 P 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,764
Number of Sequences: 5004
Number of extensions: 39817
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)