Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_H17
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical ...    31   0.86 
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    27   8.1  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    27   8.1  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    27   8.1  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    27   8.1  

>AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical
           protein F54A5.2 protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 364 RQNGSRIEYRYIRDWVLFYSADLRFFCNL 278
           R+NG  I Y +I+ W    S ++  FCNL
Sbjct: 229 RRNGKTIFYNHIKAWAFPTSNEVNIFCNL 257


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 227 ELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYVPILN 346
           +LSA H  ++ P+    ++++ P  S     P+P  P LN
Sbjct: 257 QLSAHHGYVYGPQQAMPQLSQYPSPSTAAPAPVPEQPTLN 296


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical
           protein F57C7.1b protein.
          Length = 1087

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +2

Query: 176 TPKRVPNIIAN-LPKEKNELSATHKLL--FSPRTVGLEITEKPQISRVKQDPIPYVPILN 346
           TP  +P +I+  L    +  +   K++    P  +      KP+ S      +PY P  N
Sbjct: 756 TPMMIPELISPALSVRSSSRAPVPKIIDDIGPSPIKARKISKPRASMASNVSVPYTPTGN 815

Query: 347 PRSILP 364
           PR   P
Sbjct: 816 PRGRKP 821


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical
           protein F57C7.1a protein.
          Length = 1209

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = +2

Query: 176 TPKRVPNIIAN-LPKEKNELSATHKLL--FSPRTVGLEITEKPQISRVKQDPIPYVPILN 346
           TP  +P +I+  L    +  +   K++    P  +      KP+ S      +PY P  N
Sbjct: 756 TPMMIPELISPALSVRSSSRAPVPKIIDDIGPSPIKARKISKPRASMASNVSVPYTPTGN 815

Query: 347 PRSILP 364
           PR   P
Sbjct: 816 PRGRKP 821


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 PNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYV 334
           P+++    +E+ +L    +LLFS R VG  + +       K+D  P V
Sbjct: 187 PDVLTLFIREEMKLGERRRLLFSERAVGTLLGQNKHCPYKKEDIKPLV 234


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 PNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYV 334
           P+++    +E+ +L    +LLFS R VG  + +       K+D  P V
Sbjct: 51  PDVLTLFIREEMKLGERRRLLFSERAVGTLLGQNKHCPYKKEDIKPLV 98


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 PNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYV 334
           P+++    +E+ +L    +LLFS R VG  + +       K+D  P V
Sbjct: 205 PDVLTLFIREEMKLGERRRLLFSERAVGTLLGQNKHCPYKKEDIKPLV 252


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 191 PNIIANLPKEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDPIPYV 334
           P+++    +E+ +L    +LLFS R VG  + +       K+D  P V
Sbjct: 187 PDVLTLFIREEMKLGERRRLLFSERAVGTLLGQNKHCPYKKEDIKPLV 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,837,532
Number of Sequences: 27780
Number of extensions: 221843
Number of successful extensions: 528
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)