Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_H06
         (637 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal prot...   234   8e-62
AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p pro...   234   8e-62
AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA...   234   8e-62
BT023059-1|AAY55475.1|  328|Drosophila melanogaster IP10969p pro...    35   0.080

>X75339-1|CAA53089.1|  177|Drosophila melanogaster ribosomal protein
           L18a protein.
          Length = 177

 Score =  234 bits (572), Expect = 8e-62
 Identities = 109/154 (70%), Positives = 120/154 (77%)
 Frame = +3

Query: 141 PSLPCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWL 320
           P  P YKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGEIV              NFGIWL
Sbjct: 23  PQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWL 82

Query: 321 RYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQV 500
           RY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQIIKV+ I AA  RR  V
Sbjct: 83  RYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHV 142

Query: 501 KQFHNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 602
           KQFH+S I+FPL +RVHH      F++++P TYF
Sbjct: 143 KQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176



 Score = 37.5 bits (83), Expect = 0.015
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +1

Query: 73  MKAKGQLREYEVIGRKLPFGERAQASLAIK*EFSLRIQLSPNLVS 207
           M+AKG L+EYEV+GRKLP  +  Q  L     + +RI    N+V+
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPL-----YKMRIFAPDNIVA 40


>AY071222-1|AAL48844.1|  177|Drosophila melanogaster RE26382p
           protein.
          Length = 177

 Score =  234 bits (572), Expect = 8e-62
 Identities = 109/154 (70%), Positives = 120/154 (77%)
 Frame = +3

Query: 141 PSLPCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWL 320
           P  P YKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGEIV              NFGIWL
Sbjct: 23  PQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWL 82

Query: 321 RYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQV 500
           RY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQIIKV+ I AA  RR  V
Sbjct: 83  RYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHV 142

Query: 501 KQFHNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 602
           KQFH+S I+FPL +RVHH      F++++P TYF
Sbjct: 143 KQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176



 Score = 37.5 bits (83), Expect = 0.015
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +1

Query: 73  MKAKGQLREYEVIGRKLPFGERAQASLAIK*EFSLRIQLSPNLVS 207
           M+AKG L+EYEV+GRKLP  +  Q  L     + +RI    N+V+
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPL-----YKMRIFAPDNIVA 40


>AE013599-2503|AAF57838.1|  177|Drosophila melanogaster CG6510-PA
           protein.
          Length = 177

 Score =  234 bits (572), Expect = 8e-62
 Identities = 109/154 (70%), Positives = 120/154 (77%)
 Frame = +3

Query: 141 PSLPCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWL 320
           P  P YKMRIF+PD IVAKSRFWYFLRQLKKFKKTTGEIV              NFGIWL
Sbjct: 23  PQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVYETSPVKIKNFGIWL 82

Query: 321 RYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQV 500
           RY+SRSG HNMYREYRDL+VGGAVTQCYRDMGARHRARAHSIQIIKV+ I AA  RR  V
Sbjct: 83  RYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIKVDSIPAAKTRRVHV 142

Query: 501 KQFHNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 602
           KQFH+S I+FPL +RVHH      F++++P TYF
Sbjct: 143 KQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176



 Score = 37.5 bits (83), Expect = 0.015
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +1

Query: 73  MKAKGQLREYEVIGRKLPFGERAQASLAIK*EFSLRIQLSPNLVS 207
           M+AKG L+EYEV+GRKLP  +  Q  L     + +RI    N+V+
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPL-----YKMRIFAPDNIVA 40


>BT023059-1|AAY55475.1|  328|Drosophila melanogaster IP10969p
           protein.
          Length = 328

 Score = 35.1 bits (77), Expect = 0.080
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +1

Query: 73  MKAKGQLREYEVIGRKLP 126
           M+AKG L+EYEV+GRKLP
Sbjct: 1   MRAKGLLKEYEVVGRKLP 18


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,208,193
Number of Sequences: 53049
Number of extensions: 613082
Number of successful extensions: 1883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1883
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)