Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_H06
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   177   4e-45
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    28   6.4  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  177 bits (432), Expect = 4e-45
 Identities = 79/154 (51%), Positives = 105/154 (68%)
 Frame = +3

Query: 141 PSLPCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXXXXXXNFGIWL 320
           P  P +KM+IF+ + ++AKSRFWYF+  L++ KK  GEI+              N+G+WL
Sbjct: 26  PVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWL 85

Query: 321 RYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKAAACRRPQV 500
           +Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+A  I I+KV+ +KA   +R  +
Sbjct: 86  KYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGI 145

Query: 501 KQFHNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 602
           K FH++ IRFPLP RV   K L+ F   R  T+F
Sbjct: 146 KMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 425 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 553
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 425 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 553
           QS +  ++ HQS  N G      +G   P  HH IPI  + AP
Sbjct: 164 QSSTFHSSSHQSSGNYG------SGGFSPSSHHNIPIRHSPAP 200


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 422 TQSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAP 553
           +Q  +S N D+ +G  +GCCV     +  P  +H       C P
Sbjct: 387 SQQGTSQNRDNLAGM-KGCCVKDQYHEPAPSGYHPPQAQSNCYP 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,867,736
Number of Sequences: 27780
Number of extensions: 306345
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)