Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_H04
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   1.4  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    27   2.4  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   2.4  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    26   4.2  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   5.5  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   5.5  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    25   7.3  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   7.3  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   9.6  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   9.6  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   9.6  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   9.6  

>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 102 QTNKM-ADRQHFPSAITEAVSSNTACPDTGPKAETTN 209
           +TN++    +HFP+   E   ++   P TGP  E+T+
Sbjct: 377 ETNQIPTTEEHFPATTEEVAPASEEKPATGPAEESTS 413


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -2

Query: 247 DSIVIFFWSSRKMFVV--SAFGPVSGHAVFE 161
           D+I + F S+R +  V  S FG ++GHAVFE
Sbjct: 244 DAIPLKFLSARCLKFVRPSLFGYITGHAVFE 274


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 95  SNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNN 205
           SN  +Q GG ST+ I  HG R    G   + + + NN
Sbjct: 170 SNELEQFGGESTYFITKHGVRTLAMGFLFNFSSNANN 206


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 643 PTARXAPKCGQYASTHRXRPSSPRYTH 563
           P     P   QYA THR  P S  Y H
Sbjct: 83  PNQHNLPPETQYAITHRFDPESSTYGH 109


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 90  LSQIQTNKMADRQHFPSAITEAVSSNTA 173
           LS + T K +D +H   + T  VSSNTA
Sbjct: 168 LSNVFTEKSSDYRHGLGSPTSLVSSNTA 195


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 268  ELNTCFDDSIVIFFWSSRKMFVVSAFGP 185
            EL+ CF+D+I  F+       V   F P
Sbjct: 1018 ELHRCFEDTISFFYNKKNPKVVTGVFNP 1045


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 103 KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQ 207
           K+ + +I  +  PPS+KP   T   P PD + K++
Sbjct: 346 KEVERKIEKLLEPPSQKP---TVALPVPDDRPKRR 377


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 559 ICACTAVR--TAXPGAWTRTVRIWA 627
           IC+ +A+   T   G+W  T R+WA
Sbjct: 101 ICSASALNSETIITGSWDSTARVWA 125


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 91  CLKFKQTKWRIVNIFHPPS 147
           C    Q +W I  IFHPP+
Sbjct: 357 CFLSVQLRWFITYIFHPPA 375


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 372 LTEVGFDHIPQGPDKGRRISRAQASRRMGSKLPPPYP 482
           +TE+  D     P KG++  +AQ +    +  PP  P
Sbjct: 137 VTELDDDEFDYKPKKGKKGKKAQNNNESEAAAPPEIP 173


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 80  NEIVVSNSNKQNGGSSTFSIRHHGSRLFEHGV 175
           + ++++  +K N  S   SIR   ++ FEHG+
Sbjct: 176 SNVIMAADSKHNYSSGRPSIRLQSTQYFEHGL 207


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 595 GAWTRTVRIWAXILRS 642
           G+W +TVRIW    RS
Sbjct: 485 GSWDKTVRIWDIFSRS 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,125
Number of Sequences: 5004
Number of extensions: 60351
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)