Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_H04
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73969-4|CAA98235.2| 428|Caenorhabditis elegans Hypothetical pr... 78 5e-15
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr... 33 0.24
AF101312-2|AAC69222.2| 475|Caenorhabditis elegans Hypothetical ... 31 0.72
U64609-4|AAB04601.3| 336|Caenorhabditis elegans Serpentine rece... 30 1.7
Z75554-2|CAA99954.1| 526|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z83129-3|CAB05641.1| 300|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 2.9
U70858-4|AAB09178.1| 294|Caenorhabditis elegans Serpentine rece... 28 5.1
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 28 5.1
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 28 5.1
AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical ... 28 5.1
Z83129-5|CAB05643.1| 349|Caenorhabditis elegans Hypothetical pr... 28 6.7
U64842-10|AAB37080.1| 402|Caenorhabditis elegans Hypothetical p... 28 6.7
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 28 6.7
M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL033514-1|CAA22081.2| 275|Caenorhabditis elegans Hypothetical ... 27 8.9
AF172092-1|AAD48876.1| 275|Caenorhabditis elegans homeodomain p... 27 8.9
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 27 8.9
>Z73969-4|CAA98235.2| 428|Caenorhabditis elegans Hypothetical
protein C12D8.5 protein.
Length = 428
Score = 78.2 bits (184), Expect = 5e-15
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Frame = +3
Query: 318 ILYVIYKSYISPVFYKKELTEVG-FDHIPQ--GPDKGRRISRAQASRRMGSKLPPPYPNG 488
I+Y+I+ + + P+ + L +VG F P+ G + R++ R + RR+G +PP +PNG
Sbjct: 23 IVYLIHIT-LKPLNRVRRLGDVGLFFGKPELKGFYRERQLERLKLLRRVGD-MPPVFPNG 80
Query: 489 WFAVAETRELKVGSVLSIDALGXNLCVYRGEDGLXRCVDAYCPHLGANLAVGGTV 653
W+ V E+ +L ++ I LG L + R E G D+YCPH+GAN +GG V
Sbjct: 81 WYCVCESEKLANNQIMEITVLGQFLSLIRSESGAVYITDSYCPHIGANFNIGGRV 135
>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical protein
F20B10.1 protein.
Length = 1180
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 415 RGGGSVAPKPPDGWAANCPLPTPMGGSRSPKQ-GSLKLAASSLSMPW 552
+ GG K DG+ +C + TP GGS K+ G + A SS+ +PW
Sbjct: 869 QNGGQCVDKY-DGYVCDCSM-TPFGGSDCTKEYGMMVPAGSSIQIPW 913
>AF101312-2|AAC69222.2| 475|Caenorhabditis elegans Hypothetical
protein F56E10.3 protein.
Length = 475
Score = 31.1 bits (67), Expect = 0.72
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 382 TSVSSFL*KTGLI-YDLYITYKIAENANIKVSIKIYSTIELNTCFDDSIVIFFWSSRKM 209
T+VS FL KT L + +++ K N+ S+K ++ CF IFFW RKM
Sbjct: 99 TTVSFFL-KTRLKKFQIFLPTKNPSACNL-ASLKTFTEAYTTCCFYFQSAIFFWIGRKM 155
>U64609-4|AAB04601.3| 336|Caenorhabditis elegans Serpentine
receptor, class m protein2 protein.
Length = 336
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 207 NIFLLLQKNITIESSKHVFSSIVEYILILTLMFAFSAILYVIYKSYISPVF 359
NI+ ++K + +++K I IL+L +F F I Y+S+I P+F
Sbjct: 221 NIYKQMKKKMLSDAAKKSQQQI-NLILLLQFLFPFLLIHIPFYESFIFPIF 270
>Z75554-2|CAA99954.1| 526|Caenorhabditis elegans Hypothetical
protein ZC455.3 protein.
Length = 526
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 349 LIYDLYITYKIAENANIKVSIKIYSTIELNTCFDDSIVIFFWSSR 215
+IYD Y KI +N NI+V E + S+ FFW ++
Sbjct: 53 IIYDYYAHKKIVKNPNIEVINYEVDEEEKAAASEASVFKFFWKAK 97
>Z83129-3|CAB05641.1| 300|Caenorhabditis elegans Hypothetical
protein W06G6.6 protein.
Length = 300
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 310 SPRFCMLYTSHISVLFSIKRN*QKSASIIYLKVRTRGGGSVAP 438
S FC+ SH + FS+ N +K+A +++ R + SV P
Sbjct: 255 SALFCLNSASHCLINFSMSTNYRKAAKMVFFANRKQMNTSVLP 297
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 506 FGDREPPIGVGRGQFAAHP-SGGLGATDPPP 417
FG PP+ G FA P SG GA PPP
Sbjct: 364 FGGPPPPVSSAPGNFAPPPQSGPPGAFAPPP 394
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -1
Query: 503 GDREPPIGVGRGQFAAHPSGGLGATDPPP 417
G PP G G G F P GG GA PPP
Sbjct: 421 GSYGPPQG-GPGGFGPPPPGGPGAYGPPP 448
>U70858-4|AAB09178.1| 294|Caenorhabditis elegans Serpentine
receptor, class x protein33 protein.
Length = 294
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = -2
Query: 382 TSVSSFL*KTGL-IYDLYITYKIAENANIKVSIKIYSTIELNTCFDDSIVIFFWSSRKMF 206
T V SF L +Y LYIT I + + + ++ L C++ SI F SS F
Sbjct: 43 TLVKSFFDAIYLTVYFLYITPMIIFASQLMIYCSHWAGYVLIVCYEISIHTHFLSSVNRF 102
Query: 205 VVSAFGPVSGHAVFEETAS 149
++ F P S +F A+
Sbjct: 103 -IAVFFPFSYKNIFSPCAT 120
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 463 NCPLPTPMGGSRSPKQGSLKLAASS 537
N PLPTP S P+ G +++AA S
Sbjct: 622 NAPLPTPYQASNIPQPGLVQIAALS 646
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 463 NCPLPTPMGGSRSPKQGSLKLAASS 537
N PLPTP S P+ G +++AA S
Sbjct: 622 NAPLPTPYQASNIPQPGLVQIAALS 646
>AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical
protein C27A12.9 protein.
Length = 883
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Frame = +3
Query: 159 SSNTACPDTGPKAETTNIFLLLQKNIT-IESSKH--------VFSSIVEYILILTLMFAF 311
S + P+T T + + ++ +T + SS H +F+ + ILT++F F
Sbjct: 797 SQKMSAPNTAWTLTETLVLMTIRATLTCLVSSIHRRHLMVWKIFAPKFIFECILTIVFIF 856
Query: 312 SAILYVIYKSYISPVFYKKE 371
SA ++IY+ + F E
Sbjct: 857 SANFFLIYRQFFGEKFKNSE 876
>Z83129-5|CAB05643.1| 349|Caenorhabditis elegans Hypothetical
protein W06G6.8 protein.
Length = 349
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 310 SPRFCMLYTSHISVLFSIKRN*QKSASIIYLKVRTRGGGSV 432
S FC+ SH + FS+ N +K+A +++ R + SV
Sbjct: 298 SALFCLNSASHCLINFSMSTNYRKAAKMVFFANRKQSSTSV 338
>U64842-10|AAB37080.1| 402|Caenorhabditis elegans Hypothetical
protein F25B4.1 protein.
Length = 402
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 522 VGSVLSIDALGXNLCVYRGEDGLXRCVD 605
VG V ID C Y GEDG+ VD
Sbjct: 203 VGKVFGIDGCRVTRCGYTGEDGVEISVD 230
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = +3
Query: 120 DRQHFPSAITEAVSSNTACPDTGPKAETTNIFLLLQKNI 236
+R HF I A S N AC G K T NI LL +KNI
Sbjct: 370 ERNHFFDTIGFACSENCAC---GGKC-TNNITLLPEKNI 404
>M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical
protein B0303.4 protein.
Length = 616
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 371 TDRSRLRSYTSRSGQGEADQSRPS 442
T R +LR T RSG D+SRPS
Sbjct: 168 TYRPQLRPPTERSGNTRVDESRPS 191
>AL033514-1|CAA22081.2| 275|Caenorhabditis elegans Hypothetical
protein Y75B8A.1 protein.
Length = 275
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 103 KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQT 210
KQ +W + H R+ + + D+KQKQ+T
Sbjct: 226 KQKRWELAKYLHLTERQVKIWFQNRRMKDKKQKQRT 261
>AF172092-1|AAD48876.1| 275|Caenorhabditis elegans homeodomain
protein PHP-3 protein.
Length = 275
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 103 KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQT 210
KQ +W + H R+ + + D+KQKQ+T
Sbjct: 226 KQKRWELAKYLHLTERQVKIWFQNRRMKDKKQKQRT 261
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 145 SRKPSLRTRRAPTPDRKQK 201
SR P RTRR+P+P R+++
Sbjct: 104 SRSPPRRTRRSPSPPRRRR 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,155
Number of Sequences: 27780
Number of extensions: 358320
Number of successful extensions: 1124
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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