Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_H01
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592...    28   6.7  
03_02_0164 - 6066744-6067637                                           28   6.7  
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557...    27   8.8  
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782...    27   8.8  

>09_04_0042 -
           14055885-14056142,14057508-14057774,14057859-14059292,
           14059378-14059539,14059642-14059768,14059869-14060200,
           14060289-14061083,14061379-14061714,14061791-14062730,
           14063338-14063588
          Length = 1633

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 544 SHFRGDTQQHEHIV-ALRNTHRV*VAKNIGTCNLT 443
           +H +GD   H H   AL N H V +  N+G+  +T
Sbjct: 633 NHIKGDNSFHSHHPNALCNVHSVSLGNNLGSMGVT 667


>03_02_0164 - 6066744-6067637
          Length = 297

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 322 GYPAHRHRLGLLGDT 366
           GYP H HR GL G T
Sbjct: 160 GYPQHHHRFGLAGPT 174


>12_02_1169 -
           26655170-26655332,26655429-26655504,26655603-26655715,
           26655808-26655913,26656001-26656235,26656415-26656573,
           26657279-26657377,26657472-26657568,26657650-26657768,
           26657860-26658000,26658100-26658184,26658287-26658488,
           26659274-26659379
          Length = 566

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +2

Query: 167 PVAHDLEASFRLTRFAD---LKGRSCKVPQDVLGKLVESLQQDYSQADQDQFMHVAIPRI 337
           P+   LEASFRL++  D   ++G       + L  +VES+     +  QD  +  +  R 
Sbjct: 364 PLPSSLEASFRLSQEYDEEKVRGPPVDANHEQLSSVVESINDTLIEKKQDTSVEESKRR- 422

Query: 338 GIGLDCSVTPLRHGGLCLVQTTDF-FYPLV 424
                CS++ +  G + L  +  F F P +
Sbjct: 423 -KAAVCSISSVCVGVVVLTTSASFTFLPFL 451


>07_01_0929 +
           7818973-7820019,7820092-7820328,7820455-7820541,
           7820785-7820919
          Length = 501

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 582 RIIRGITTSRSFSVIFVETPNNMSILSHSVTPIAYRSLRTL 460
           R +R    +  F  I V TP+++ ILS S  P A R L  L
Sbjct: 140 RTLRAALVAAGFRRIRVSTPHSLGILSVSSPPSASRFLDVL 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,485,788
Number of Sequences: 37544
Number of extensions: 343064
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)