Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_G21
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0307 - 22250221-22250482,22250664-22250758                       29   4.3  
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194...    28   5.6  
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185...    28   7.5  
12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332     27   9.9  
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331...    27   9.9  

>11_06_0307 - 22250221-22250482,22250664-22250758
          Length = 118

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 183 PTAPTVSTSGEARAIRRIVGRWGAEWLS*LGSRHQDNAGSW 305
           P +P+   SG+A     + GRWG    S +G  H  N G+W
Sbjct: 11  PRSPSRRPSGDAADEGGVAGRWG----SLVGFFHNHNHGAW 47


>04_03_1002 -
           21617339-21617362,21618476-21618565,21618755-21619432,
           21619536-21619772,21619849-21619896,21619995-21620045,
           21620301-21620426,21620557-21620697,21621165-21621401,
           21622467-21622571,21622812-21622982,21623306-21623380,
           21623754-21623936,21624151-21624297,21624365-21624472,
           21624605-21624709,21625109-21625213,21625322-21625381,
           21625512-21625579,21625876-21625954,21626208-21626267,
           21626445-21626498,21626834-21626886,21627405-21627494,
           21628265-21628362,21628464-21628852
          Length = 1193

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 304 GRPTTPCRRRAGGHPVRLCTSLSVNTRSWSPKP 402
           GRPTTP    AGG P     + + +T   S +P
Sbjct: 59  GRPTTPSSSSAGGRPTTPSAAFARSTTPSSGRP 91


>04_04_0477 +
           25517060-25517152,25517263-25517382,25518203-25518506,
           25518944-25519305,25519401-25519575,25520510-25520574,
           25520725-25520790,25521275-25521350,25521813-25521922
          Length = 456

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 488 PYRHPERILPEI*P-ADPRPQTH---LRGSGHGSHQTLETL 598
           P  HP    PE  P  +P  QT+   LR  GH SHQ + ++
Sbjct: 268 PIVHPSVTTPEEEPMGEPAKQTYASVLRTKGHPSHQAIHSI 308


>12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332
          Length = 524

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 570 CPDPRRCVCGRGSA 529
           C DP RCVC RGS+
Sbjct: 291 CADPVRCVCVRGSS 304


>01_06_0898 -
           32832665-32832724,32832761-32832815,32832957-32833135,
           32833218-32833328,32833600-32833647,32833810-32833949,
           32834402-32834539,32834660-32834804,32834936-32835002,
           32835226-32835329,32835444-32835647
          Length = 416

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 328 RRAGGHPVRLCTSLSVNTRSWSPKPKY 408
           RR  G     C S S N+  W+P P Y
Sbjct: 86  RRIDGGAASSCASTSSNSGRWAPSPAY 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,869,056
Number of Sequences: 37544
Number of extensions: 371165
Number of successful extensions: 1291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)