Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_G21
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.0  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   7.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 32  TNSEKGHLLRSASSQTMDMLNI-KPLS 109
           TN++  HL R+ASS   D+ ++ +PL+
Sbjct: 266 TNTDARHLFRTASSTPEDLQDLEEPLT 292


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 134 LPETTLCPHLTV 99
           LPE  LCPH  V
Sbjct: 437 LPEEILCPHFNV 448


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 77  TMDMLNIKPLSEDIEWSP 130
           T+  +NIK   E IEW P
Sbjct: 671 TIICINIKRQKEKIEWDP 688


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 134 GARGRGGHWGRS 169
           G+RGRGG+ GR+
Sbjct: 90  GSRGRGGNRGRT 101


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -3

Query: 310 AGQ-LPALSWCLEPSQLNHSAPQR 242
           AG+ LP + W      LNH  P +
Sbjct: 426 AGEPLPRVQWLKNDEALNHDQPDK 449


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 518 LVEFFQGVDRGSHVSVVVRQEVA 450
           L++ F G D G + + VV +E+A
Sbjct: 66  LIKKFNGYDDGGNFNEVVIREIA 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,169
Number of Sequences: 438
Number of extensions: 3193
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)