Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_G20
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    75   4e-15
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    73   1e-14
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.33 
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   1.3  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    26   1.7  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   1.7  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   2.3  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.0  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   4.0  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   4.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   5.3  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   5.3  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    24   7.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   7.0  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   7.0  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    24   9.3  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 74.9 bits (176), Expect = 4e-15
 Identities = 34/73 (46%), Positives = 53/73 (72%)
 Frame = +2

Query: 104 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQ 283
           V+DK  +  +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71

Query: 284 VVQHHGQVIYTRA 322
           V QH  Q IYTRA
Sbjct: 72  VDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 73.3 bits (172), Expect = 1e-14
 Identities = 33/72 (45%), Positives = 52/72 (72%)
 Frame = +2

Query: 104 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQ 283
           V+DK  +  +FDK   +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71

Query: 284 VVQHHGQVIYTR 319
           V QH  Q IYTR
Sbjct: 72  VDQHSKQAIYTR 83


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 28.7 bits (61), Expect = 0.33
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = -2

Query: 255 SMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFXFL 76
           S+SA        FNL+    GV ++  G S  +F+ + + +  W F +    P+D   FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197

Query: 75  ALPPPDPSFFFCVL 34
              P    +   V+
Sbjct: 198 EALPSSHQWLLTVM 211


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 152 HMWVYQTTPGCSTCHELFLWTTSXSWLCRHRILPSSSV 39
           +M  YQ TP     HE   WT S   L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = -2

Query: 267 FSLSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRT 103
           F  S M+ +  +    FN  LSD    VIS   G + Y F  V LS+ T   W  N +  
Sbjct: 203 FYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFP 262

Query: 102 FPLDHF 85
           +P+  F
Sbjct: 263 YPIITF 268


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 295 MLDYLFDETFFPKLDECSSR 236
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = -2

Query: 354 IVYATGSSPLVARV*ITCP*CWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYC 175
           I+Y T ++P++  + +T   CW   L  P  L ++  L    P   + SD    ++    
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP--LCTIVTL----PVENHSSDAILTLLYNSV 313

Query: 174 GTSLYSFSYVGLSNNTWLFNLSRTF 100
             S +SF +    ++  LF  SR F
Sbjct: 314 KESYHSFKHAMSISSIRLFLFSRLF 338


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 24  TASKEHRRRRKDPVAAKPRXRSGP 95
           TASKE  +  + PV  KPR    P
Sbjct: 282 TASKEPSKSSQQPVRTKPRIAQSP 305


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 21  QTASKEHRRRRKDPVAAKPRXRSGPKEKFVTS*TTRC 131
           ++  K HR    DP+   P  R GP  + V +   +C
Sbjct: 199 KSGRKVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   DAXASAKQPQKNTEEEGRI 60
           +A    KQP KN +E GRI
Sbjct: 230 EAKGKGKQPLKNPQERGRI 248


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 159  SFSYVGLSNNTWLFNLSRTFPLDHFXFLALPPP 61
            SF Y  L NN++L  +S +   ++  ++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 206 SERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 313
           +ERL +  ++ R AL+EL++  LIKQ      QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 9   EXFGQTASKEHRRRRKDPVAAK 74
           E +     KE  RRRKDP++ +
Sbjct: 357 EVWAGKLEKEENRRRKDPISTR 378


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 258  SSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT--WLFNLSRTFP 97
            S+ S  L+ EP+TF+ S T +  IS     SL       LS++T   L + S T P
Sbjct: 946  SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 212  RLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 337
            R   RG++  R +I  +EK  +++VV   G+   TR TK  D
Sbjct: 1551 RFITRGTIEERIVIRAKEKEEVQKVVISGGE---TRPTKQMD 1589


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 146 TYEKLYKEVPQYKLITPAVVS 208
           TY+K+Y E P  K++   + S
Sbjct: 96  TYKKIYNEYPPTKILVQEIAS 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,285
Number of Sequences: 5004
Number of extensions: 31234
Number of successful extensions: 103
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)