Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_G20
(382 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 120 5e-28
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 28 2.0
AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine re... 27 3.4
AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore ... 27 3.4
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 27 3.4
U70858-5|AAB09179.2| 294|Caenorhabditis elegans Serpentine rece... 27 4.5
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 27 6.0
AL117195-21|CAB55033.2| 313|Caenorhabditis elegans Hypothetical... 26 7.9
AF024492-4|AAF98617.1| 848|Caenorhabditis elegans Hypothetical ... 26 7.9
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 26 7.9
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 120 bits (288), Expect = 5e-28
Identities = 58/80 (72%), Positives = 66/80 (82%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQ 283
VRDKLNN VLFD+ TY+KLYKEV YKLITP+VVSERLKVR SLA+ L EL+ KGL+K
Sbjct: 36 VRDKLNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKC 95
Query: 284 VVQHHGQVIYTRATKGDDPV 343
VV HHGQV+YTRATK D +
Sbjct: 96 VVHHHGQVVYTRATKEADVI 115
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 104 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 235
V K N +LFD+ EKL++++ + + P V E+L +VR +L
Sbjct: 688 VYGKNTNCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732
>AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 65 protein.
Length = 316
Score = 27.5 bits (58), Expect = 3.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 255 SMSALLAREPRTFNLSDTTAGVISLYCG 172
S++ ++ E F+LSDT ++ L+CG
Sbjct: 2 SVNRTISLENGKFDLSDTIVNIVELFCG 29
>AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform a protein.
Length = 411
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 264 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 127
S++S+ AL A + NL TTA + LY S S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 264 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 127
S++S+ AL A + NL TTA + LY S S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273
>U70858-5|AAB09179.2| 294|Caenorhabditis elegans Serpentine
receptor, class x protein34 protein.
Length = 294
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 169 FLVQFLICGFIKQHLVVQLVTNF-SFGPLLXLGFAATGSFLLLLCSFEAVW 20
FL+ +CGFI L+V++V + + + A S ++ SFE ++
Sbjct: 10 FLIPPALCGFITNWLIVKIVIQYRNLHRSFPIFTATVASLYAIMASFELMF 60
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 215 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 319
L V+GS+ + A +ELR + Q + H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225
>AL117195-21|CAB55033.2| 313|Caenorhabditis elegans Hypothetical
protein Y57A10A.28 protein.
Length = 313
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 294 CWTTCLMRPFSLSSMSALLAREP 226
CW +C++ F+ S +S L EP
Sbjct: 62 CWLSCMLMSFAGSFLSCFLLGEP 84
>AF024492-4|AAF98617.1| 848|Caenorhabditis elegans Hypothetical
protein F14F9.3 protein.
Length = 848
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 110 DKLNNQVLFDKPTYEKLYKEVPQYK 184
++L NQVLFDKP EK + ++K
Sbjct: 32 EELANQVLFDKPRGEKRWLGKERHK 56
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Frame = -3
Query: 173 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSXSWLCRHRIL 54
GL + W YQ CS TC F W W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,975,716
Number of Sequences: 27780
Number of extensions: 186677
Number of successful extensions: 521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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