Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_G16
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal prote...   133   7e-32
Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    27   6.5  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    27   8.6  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    27   8.6  

>U41534-2|AAB47594.1|  151|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 13 protein.
          Length = 151

 Score =  133 bits (322), Expect = 7e-32
 Identities = 60/78 (76%), Positives = 72/78 (92%)
 Frame = +1

Query: 277 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 456
           I+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVESRIHRLARYYKTK 
Sbjct: 74  ILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVESRIHRLARYYKTKR 133

Query: 457 VLPPNWKYESSTASALVA 510
            LPP WKYES TA++LV+
Sbjct: 134 QLPPTWKYESGTAASLVS 151



 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 43/78 (55%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
 Frame = +3

Query: 54  MGRMHAPG*GY----LPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLR 221
           MGRMH PG G     +P RR + +     W K+TA++V++QI K+ KKGL PSQIGV+LR
Sbjct: 1   MGRMHNPGKGMAKSAIPYRRSVPS-----WQKMTAEEVQDQIVKMAKKGLRPSQIGVILR 55

Query: 222 DSHGVAQVRFVTGKKILR 275
           DSHGV QVR + G KI R
Sbjct: 56  DSHGVGQVRRLAGNKIFR 73


>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 164 NLQTWKEGSHSLTNWCNAEGFTW 232
           N++TW +    LTN  NA G  W
Sbjct: 467 NIETWDKAEADLTNALNASGRKW 489


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 164 NLQTWKEGSHSLTNWCNAEGFTW 232
           N++TW +    LTN  NA G  W
Sbjct: 508 NIETWDKAEADLTNALNASGRKW 530


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 128 LVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKD 268
           +V   C  C  T L   + G+H L+    A G++  CP  I N + +
Sbjct: 91  IVSFTCPYCNITGLTERQFGTHVLSQHPEAPGYSVICPLCIGNTEME 137


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 419 GFTDWPVITKLRVCFLLTG 475
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 419 GFTDWPVITKLRVCFLLTG 475
           GF +WPV   + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,933,408
Number of Sequences: 27780
Number of extensions: 202515
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)