Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_G05
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0172 + 1362101-1363708 31 0.61
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.80
09_04_0377 + 17086775-17088310 30 1.4
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 30 1.4
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 2.4
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 29 4.3
12_02_0259 + 16527788-16527842,16528014-16528381 28 5.6
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 7.5
11_03_0112 - 10135052-10135168,10135712-10135795,10135879-101359... 28 7.5
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 7.5
11_06_0204 + 21191611-21192807 27 9.9
02_03_0101 + 15233783-15234601 27 9.9
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 27 9.9
>06_01_0172 + 1362101-1363708
Length = 535
Score = 31.5 bits (68), Expect = 0.61
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 244 LEAGETLRASSGKIEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSY-- 417
L + LR ++ +P +L + P L NI++ G VGI LDA +K+
Sbjct: 167 LVSARRLRLAAALFRAAPTKLYI-TPN-LVSCNILLKGLVGIG---DLDAALKVLDEMPG 221
Query: 418 LGLIPNLSQFTTSESAQAGVPQAPGKSK 501
LG+ P++ +TT SA G G K
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQK 249
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 327 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 437
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>09_04_0377 + 17086775-17088310
Length = 511
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 566 RRKRTPSVWRLRRKRTPSVWRSR 634
RR R+PS +R RR R+PS +R R
Sbjct: 43 RRDRSPSPYRSRRDRSPSPYRDR 65
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Frame = +3
Query: 156 VQFKVRAANDAHVALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESP----- 320
+ F+ A ND V L Q Y + + ++ +R K K+E++
Sbjct: 33 ITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLKIEVDGKTVVDV 90
Query: 321 ---GILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTGW 473
G+ ++ +W+ G+IS GR W DP+P V YVG+ + W
Sbjct: 91 AGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGL-SSW 146
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +3
Query: 315 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 452
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 536 RSTPWLPWRLRRKRTPSVWRLRRKRTPSVWRSRYMG*CF 652
RS P + WR RR R+P W + K V MG CF
Sbjct: 31 RSAPSILWRRRRPRSPCPWSV-EKGEEVVLVHASMGNCF 68
>12_02_0259 + 16527788-16527842,16528014-16528381
Length = 140
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -2
Query: 413 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVS 255
E +S +A+ G +A+P PK +F + + L+G G P++ SV+
Sbjct: 68 EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -3
Query: 424 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 320
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>11_03_0112 -
10135052-10135168,10135712-10135795,10135879-10135953,
10137801-10137978,10138048-10138212,10138291-10138337,
10140233-10140301,10140531-10140629,10141256-10141375,
10141459-10141581,10149251-10149364,10150725-10150913,
10151058-10151110,10151365-10151470,10151957-10152085
Length = 555
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -2
Query: 542 CCVQCSCYRCSRWHFDFPGACGTPACADSDVVNWERFGIRPRYEWNSFTLASSGDNAA 369
CC + RC W + G G + DV + + YE SF A SG N+A
Sbjct: 40 CCAKPK-KRCVDWIGEGGGLGGMEEYIEEDVGTCSAWNLEANYEVVSFIYAFSGINSA 96
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 320 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 204
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
>11_06_0204 + 21191611-21192807
Length = 398
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 219 SDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNG 335
S +Y G WG+A ++ R++ D V++ PG+ G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233
>02_03_0101 + 15233783-15234601
Length = 272
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 319 PEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIP 432
PE T+G V+ + + + P+ RV+LF Y+ + P
Sbjct: 222 PEHTTDGMPVILESMALVSTPPVAKRVRLFGVYIDVPP 259
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 587 VWRLRRKRTPSVWRSRYM 640
+WR+R RT +WR+R++
Sbjct: 464 IWRVRDGRTTKIWRNRWV 481
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,499,981
Number of Sequences: 37544
Number of extensions: 370310
Number of successful extensions: 1239
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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