Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_G05
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical ...    31   0.54 
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z68215-2|CAA92451.2|  452|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   5.0  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   6.7  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   6.7  
AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    27   8.8  

>AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.9 protein.
          Length = 263

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 403 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPP 245
           A+PS P  I     +T+KP  S P +I   S +  +  +  F  TL + P  P
Sbjct: 186 ANPSLPVHIQTFRVKTRKPVLSRPTKIRFSSEADRNSFIFSFSKTLRSLPDRP 238


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = -2

Query: 407 NSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLIH 228
           +S  L+S   N +  + P+T+    +  S +F+F+L       P  +L +SP  ++H+IH
Sbjct: 261 SSLLLSSINSNLSHNSIPQTSP-KRISQSSSFSFSL-------PPSSLPLSPKIDNHVIH 312

Query: 227 RIR 219
           +I+
Sbjct: 313 KIK 315


>Z68215-2|CAA92451.2|  452|Caenorhabditis elegans Hypothetical
           protein C53B4.2 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 367 IAALSPLDARVKLFHSYLGLIPNLSQFTTSE 459
           I A SPLD + K+F   +   P LS++TT E
Sbjct: 189 IKATSPLDDKSKMFMDRIVKKPYLSKYTTKE 219


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 98   DVATDDNLQYQFFPXFKWISSVQSQSS 178
            D +TDD L  QF   FK I+S + QSS
Sbjct: 921  DKSTDDKLTNQFMEVFKSIASNEPQSS 947


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 442 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 335
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 538  QHPLATLEATEETYPLRLEATEETYPLRLEEPVYGLM 648
            +  L   + TEET+  R  A +E  P   E+PV+G M
Sbjct: 5865 EQTLEEADITEETHQ-RFSAEDEHQPTSTEKPVHGFM 5900


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 538  QHPLATLEATEETYPLRLEATEETYPLRLEEPVYGLM 648
            +  L   + TEET+  R  A +E  P   E+PV+G M
Sbjct: 5865 EQTLEEADITEETHQ-RFSAEDEHQPTSTEKPVHGFM 5900


>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 556 LEATEETYPLRLEATEETYPLRLEEPVY 639
           L AT +++P RLEA+ E   + L  PV+
Sbjct: 386 LRATVDSFPRRLEASRELLTIILTHPVW 413


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 219 SDPMYEVMIGGWGNAKSVIRKNRTK 293
           S+P YEV++GG   A  V+ +N+ K
Sbjct: 334 SNPHYEVVLGGKKTANFVVEENKIK 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,459,363
Number of Sequences: 27780
Number of extensions: 291460
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)