Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_F24
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces... 70 2e-13
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 1.7
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 2.3
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 2.3
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 26 5.2
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 6.9
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 25 9.1
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 25 9.1
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 9.1
>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 113
Score = 70.1 bits (164), Expect = 2e-13
Identities = 38/104 (36%), Positives = 66/104 (63%)
Frame = +2
Query: 275 LTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVEREEL 454
+ ++V GG +LLFNK K ++L +L S L +L + + + + +++L
Sbjct: 1 MAIKVELLGGLDLLFNKQKALSLSLSNL-----GSTKLG-SLIDYMAQIIEK--PSQKDL 52
Query: 455 FLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 586
F+ + +VRPGI+VL+N++DWEL + Y L+E D+++F+STLHG
Sbjct: 53 FILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.5 bits (58), Expect = 1.7
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = +2
Query: 260 EMAETLTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLV 439
E E + EL+ N+ + E+ SLK L ++QNL +E L L L
Sbjct: 685 EREEAIVAGQKLSASFELMSNEKQALELKYSSLKNELINAQNLLDRREEELSELSKKLFE 744
Query: 440 ERE-ELFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLH 583
ER+ DD + + ++N E + Q+ + E+DK+ +H
Sbjct: 745 ERKIRSGSNDDIEKNKEINVLNSELADKLAQIRH--LESDKMELDKLVH 791
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = -3
Query: 494 TRVYQVGQNHPSRTTLLFPPAGCPLTKSTALLTSNSDFENPVKRSSMT 351
++++Q+ + T A PL++S +++TS++D + RSS T
Sbjct: 799 SQLFQLLSEFSKKDTASSTGADTPLSRSQSVITSSTDVTSSASRSSDT 846
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +2
Query: 335 KEITLPSLKTFLPDSQNLNW---TLKELLIW--LKDNLLVEREELFLKDDSVR 478
K IT S TF P ++++W T E L++ +D ++ RE+ F +++ R
Sbjct: 285 KNITSDSSFTFCPTDKDVDWRTHTAFEQLVYHAYQDRHVINREQFFADEEAKR 337
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 5.2
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +2
Query: 326 VKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 505
VKR E+TL LK + + W + L L D L + + +F + + E
Sbjct: 224 VKRDELTLEGLKQYFIAVEKEEWKF-DTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE 282
Query: 506 EDW---ELHGQLNYELKENDKIM 565
++ +HG++ KE D IM
Sbjct: 283 ANFTVTSMHGEM--PQKERDAIM 303
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 440 EREELFLKDDSVRPGILVLINEEDWELH-----GQLNYELKENDKIMFIS 574
EREE+FL+DD + L++ +D L + +EL + FIS
Sbjct: 7 EREEVFLEDDQAQHSQAELLSSKDENLQPSIPLSPVAFELDFSGNFQFIS 56
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -3
Query: 491 RVYQVGQNHPSRTTLLFPPA 432
++ VG+N+P+ + LFPP+
Sbjct: 169 KLKDVGENYPNLSEFLFPPS 188
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 326 VKRKEITLPSLKTFLPDSQNLNWTLKELLIWL 421
++ + T+P + LP S N L E L WL
Sbjct: 100 IRFRGYTIPECQKLLPSSPNGKQPLPESLFWL 131
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 488 VYQVGQNHPSRTTLLFPPAGCPLT 417
VYQ HP R LL P GC T
Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKT 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,771
Number of Sequences: 5004
Number of extensions: 46251
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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