Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F24
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0304 - 16469075-16469192,16469874-16469956,16470079-164701...    99   1e-21
09_02_0154 + 5055946-5058721,5058754-5058770                           31   0.58 
01_03_0223 + 13924231-13924510,13924670-13924893,13925482-139257...    31   1.0  
05_05_0078 - 22229607-22229685,22229851-22229921,22229992-222300...    28   5.4  
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285...    28   7.1  
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92...    28   7.1  
05_04_0184 - 18855062-18855604,18855889-18856611                       27   9.4  

>07_03_0304 -
           16469075-16469192,16469874-16469956,16470079-16470157,
           16470269-16470291
          Length = 100

 Score =   99 bits (238), Expect = 1e-21
 Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
 Frame = +2

Query: 275 LTVEVMFGGGAELLFNK-VKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVEREE 451
           LT+E  FGGG ELL  K  K  ++ L       P+  +    +K LL W+K NL+ ER E
Sbjct: 3   LTLE--FGGGLELLLEKSTKVHKVDLQ------PNDGDGKVVMKGLLAWVKSNLIKERPE 54

Query: 452 LFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHGG 589
           +FLK DSVRPG+LVLIN+ DWEL G L+ EL+E D ++FISTLHGG
Sbjct: 55  MFLKGDSVRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100


>09_02_0154 + 5055946-5058721,5058754-5058770
          Length = 930

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 11/29 (37%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
 Frame = +2

Query: 497 INEEDWEL-HGQLNYELKENDKIMFISTL 580
           I+E +W+L +GQLN++L +N K+ +++++
Sbjct: 393 IDEAEWKLFYGQLNWQLTKNQKLNYVTSI 421


>01_03_0223 +
           13924231-13924510,13924670-13924893,13925482-13925735,
           13926041-13926422,13926938-13927369
          Length = 523

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 488 LVLINEEDWELHGQLNYELKENDKIMFISTL 580
           L+L N EDWE H ++ +    +DK+ F+S +
Sbjct: 143 LILANGEDWERHRKVVHPAFNHDKLKFMSVV 173


>05_05_0078 -
           22229607-22229685,22229851-22229921,22229992-22230058,
           22230195-22230263,22230376-22230526,22230915-22230990,
           22231466-22231569,22231676-22231772,22231845-22231931,
           22232016-22232102,22232190-22232279,22232405-22232482,
           22232595-22232759,22232898-22233048,22233610-22233887,
           22234072-22234233,22234324-22234560,22234633-22234704,
           22235187-22235273,22235498-22235557
          Length = 755

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 413 STALLTSNSDFENPVKRSSMTAV*FLSSLLY*KAIQLRPQTSLLQLESLP 264
           S+ LL ++SDFENP  R  +T    + SLL  K I +  +   +     P
Sbjct: 157 SSQLLVTDSDFENPKFREQLTET--VESLLDLKVIPIFNENDAISTRKAP 204


>12_01_0371 -
           2851186-2851491,2851582-2851765,2851967-2852156,
           2853375-2853613,2853862-2853947,2854720-2854827,
           2854929-2855031,2855152-2855213
          Length = 425

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +2

Query: 467 DSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 586
           +++ P +L+L  E  W + G  + +  +  ++++ S+LHG
Sbjct: 213 ENISPDLLLLNKEYAWHIGGGFSQQEVQEWRLLYHSSLHG 252


>04_01_0084 -
           912255-912368,912738-912822,914050-917105,920290-920508
          Length = 1157

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 314 LFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLI 415
           +F ++K+ +++   +KT    S   NW+LKELL+
Sbjct: 623 VFERLKQLDVSGTCIKTLDLRSMRGNWSLKELLL 656


>05_04_0184 - 18855062-18855604,18855889-18856611
          Length = 421

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 284 EVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQ 382
           +++ G G +++F  +K K+  LP + + LP+ Q
Sbjct: 209 DIITGNGYKVIFEHIKGKDNNLPDMLSRLPELQ 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,314,265
Number of Sequences: 37544
Number of extensions: 255808
Number of successful extensions: 508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)