Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_F20
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 73 1e-13
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 68 6e-12
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 63 2e-10
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 37 0.012
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 30 1.4
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 27 9.7
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 72.9 bits (171), Expect = 1e-13
Identities = 51/150 (34%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Frame = +1
Query: 103 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTPAE 267
L L++YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I +S AE
Sbjct: 33 LQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAE 92
Query: 268 RKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXXKAYADK 447
+ ++ VDLFG +A A K
Sbjct: 93 GEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGE------ETEEEKKAAEERAAAVK 146
Query: 448 KSKKPXLIAKSSILLDVXPWDDETDMKEME 537
S K KSS+LLDV PWDDETDM ++E
Sbjct: 147 ASGKKKESGKSSVLLDVKPWDDETDMAKLE 176
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 67.7 bits (158), Expect = 6e-12
Identities = 48/149 (32%), Positives = 64/149 (42%), Gaps = 4/149 (2%)
Frame = +1
Query: 103 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI----ASYTPAER 270
L L Q+L+ K+YVSG S+ D++VF V P A P+ RWY+ + AS P +
Sbjct: 14 LKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKA 73
Query: 271 KTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXXKAYADKK 450
+ +DLFG + A K
Sbjct: 74 VGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGD-------ETEEDKKAADERAASKA 126
Query: 451 SKKPXLIAKSSILLDVXPWDDETDMKEME 537
S K KSS+LLDV PWDDETDMK++E
Sbjct: 127 SSKKKESGKSSVLLDVKPWDDETDMKKLE 155
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 62.9 bits (146), Expect = 2e-10
Identities = 48/153 (31%), Positives = 64/153 (41%), Gaps = 8/153 (5%)
Frame = +1
Query: 103 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTPAE 267
L L++YL +SY+SGY S D+ V+ AP+++ +V RW+ I S A+
Sbjct: 14 LKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTAD 73
Query: 268 R---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXXKAY 438
K S VDLFG +A
Sbjct: 74 GQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGE------ETEEEKKAAEERAA 127
Query: 439 ADKKSKKPXLIAKSSILLDVXPWDDETDMKEME 537
A K S K KSS+LLDV PWDDETDM ++E
Sbjct: 128 AVKASGKKKESGKSSVLLDVKPWDDETDMTKLE 160
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Frame = +1
Query: 100 VLNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 246
+L +LNQ L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 75 LLGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Frame = +1
Query: 97 RVLNDLNQYLAEKSYVSGYTPSQADVQVFEQV---GKAPAANL----PHVLRWYNQIASY 255
+VL+ + +LA Y++G S AD + K P A L PHV W++ I+S
Sbjct: 146 QVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS- 204
Query: 256 TPAERKT 276
PA +KT
Sbjct: 205 RPAWKKT 211
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 145 SGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKTWSQGTSPL 300
SG TP D ++ P LPHV+ +++ +TP ++ S G S L
Sbjct: 510 SGITPPLPD-----EIALPPRGRLPHVIVHLDEMEDWTPGPPRSPSFGVSGL 556
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.128 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,518,086
Number of Sequences: 37544
Number of extensions: 219145
Number of successful extensions: 414
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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