Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F18
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   189   3e-49
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   188   4e-49
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   3.2  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   3.2  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   5.5  
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch...    25   9.6  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   9.6  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   9.6  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   9.6  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   9.6  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  189 bits (460), Expect = 3e-49
 Identities = 90/138 (65%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
 Frame = +1

Query: 103 RTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKR 282
           R HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT  ++GV++ K 
Sbjct: 20  REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79

Query: 283 VRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGXTVNLKRQXAPPKAAH 462
           V  R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA G TV L+RQ APP  AH
Sbjct: 80  VGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAH 139

Query: 463 IVS-GTEKPVLLAPIPYE 513
            VS    +PV L P+ Y+
Sbjct: 140 FVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  188 bits (459), Expect = 4e-49
 Identities = 90/138 (65%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
 Frame = +1

Query: 103 RTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKR 282
           R HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT  ++GV++ K 
Sbjct: 20  REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79

Query: 283 VRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGXTVNLKRQXAPPKAAH 462
           V  R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA G TV L+RQ APP  AH
Sbjct: 80  VGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAH 139

Query: 463 IVS-GTEKPVLLAPIPYE 513
            VS    +PV L P+ Y+
Sbjct: 140 FVSTENNEPVTLHPVAYD 157


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -3

Query: 417 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 253
           +A SLG  Q   +L      +LSA G   M   D+ +    PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 117 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 221
           +  L  H    SW   +  R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 312 DALRYNPSANTLVDNHTES 256
           D  R N S N ++DNHT++
Sbjct: 29  DPARKNESTNDVIDNHTDT 47


>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 211

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 417 LAGSLGFLQ*PLILFDSLKEVLSALGV 337
           LAG L F    + LFD LKE+    GV
Sbjct: 22  LAGDLVFRPNAIELFDELKEICKDAGV 48


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 240 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 112
           + + C   V    H  +  T+   V    N +H++   ERNS+
Sbjct: 83  IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +2

Query: 326 SMSSTPSADKTSLRE 370
           SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
 Frame = +1

Query: 145 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 297
           Y VGD VD+  NG V   M  ++      +   TG+V    N   + L ++  +R  G  
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717

Query: 298 IPKRINIR----VEHVKHSKCR-QDFLKRVKEN 381
            P  +N++    ++ ++  + +  DFLK  K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 305 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDXQLPLKLPTSSVELRN 484
           SAS S  S++S+ S D  ++   +R R   RKP +  +P+  +  + P  + T   +   
Sbjct: 56  SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114

Query: 485 P 487
           P
Sbjct: 115 P 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,978
Number of Sequences: 5004
Number of extensions: 38926
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)