Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_F18
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 171 4e-43
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.10
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 30 0.95
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z81491-1|CAB04019.1| 181|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z68218-4|CAA92474.1| 329|Caenorhabditis elegans Hypothetical pr... 27 8.8
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 171 bits (415), Expect = 4e-43
Identities = 83/141 (58%), Positives = 101/141 (71%), Gaps = 2/141 (1%)
Frame = +1
Query: 103 RTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKR 282
R HG LSTY YK GD+VDI+ NGA QKGMP K YHG+TGR++NVT A+G+IVNKR
Sbjct: 20 RKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVGIIVNKR 79
Query: 283 VRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGXTV-NLKRQXAPPKAA 459
VRG I+PKRINIR+EH+K SKCR DFL RVK N+ K AK+AG V LKR P+ A
Sbjct: 80 VRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGA 139
Query: 460 H-IVSGTEKPVLLAPIPYEFV 519
H + + +P LLAP+ +E V
Sbjct: 140 HTVTTQNNEPELLAPLRFEIV 160
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 230 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 93
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 230 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 93
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 230 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 93
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 147 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 284
Q RHC Q C S Y W+ RSRV +C+ + Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -3
Query: 384 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 229
LILFD+LK VL ++GVL + I+ L A L +TE + + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -3
Query: 384 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 229
LILFD+LK VL ++GVL + I+ L A L +TE + + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251
>Z81491-1|CAB04019.1| 181|Caenorhabditis elegans Hypothetical
protein D1086.1 protein.
Length = 181
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 204 TQSIPW--KDRSRVQRDCSCSRCDCQQACSRKDYTEA 308
T+ + W D+SR+ D C++ ++ C KD+ +A
Sbjct: 120 TECVQWYFSDKSRMSTDQKCAQFKAKKQCIEKDFGKA 156
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 240 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 335
++ C C+ R +C R YT+ QY C +CQ
Sbjct: 26 RQSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 240 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 335
++ C C+ R +C R YT+ QY C +CQ
Sbjct: 26 RQSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57
>Z68218-4|CAA92474.1| 329|Caenorhabditis elegans Hypothetical
protein K01H12.4 protein.
Length = 329
Score = 27.1 bits (57), Expect = 8.8
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +1
Query: 241 NVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGXT 420
+++A NK + + I K +E +KH KCR LK+ K ++ K AG T
Sbjct: 143 SISATTASSCSNKSLYRKHIEKLAIEPLEDIKHLKCRG--LKKSKPDDLFPKATYDAG-T 199
Query: 421 VNLKRQXAPPKAAHI----VSGTEKPVLLAPIPYEFV 519
K +P + S T K LA P EFV
Sbjct: 200 GKPKMALSPSSMVSVDLSYASTTAKSNSLAYQPMEFV 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,607,044
Number of Sequences: 27780
Number of extensions: 228212
Number of successful extensions: 787
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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