Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F17
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   2.4  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   9.5  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = -2

Query: 322 LDEFHKQFSFNSRHIQVKRAVSDTVFCSYVSSWFCLVSSS 203
           LD+ H++  FN + + + +A+ D++    +   + ++ +S
Sbjct: 377 LDDIHRRTCFNGKRLYITKAIRDSMVGDSIHGLYSILETS 416


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 388 LFALYH-NPLFSQENETVIRHKILDEFHKQFSFNSRHIQVKRAVSDTVFCSYVSSWF 221
           LF  YH   +FS E   + R  +L +F +        + +     D   CSY S WF
Sbjct: 728 LFKNYHLQNIFSSEMRGLSR--VLHQFTRLVEDYMPSLAIHFKRQDIKTCSYASEWF 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,481,939
Number of Sequences: 5004
Number of extensions: 47532
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)