Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F17
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0265 - 15012662-15013918                                         28   5.6  
02_01_0511 - 3706123-3706166,3706436-3706492,3706734-3706818,370...    27   9.9  
01_06_0227 - 27686525-27686607,27686731-27686803,27687027-276873...    27   9.9  

>08_02_0265 - 15012662-15013918
          Length = 418

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 527 QLHSTHSHHIIRKIPLELDTSLTANDAHRLDASEGYHE 414
           ++  T +   + ++ LE D  L   D HR     GYHE
Sbjct: 232 EMDLTRTSRFVARVLLECDGRLLMADRHRHGGDAGYHE 269


>02_01_0511 -
           3706123-3706166,3706436-3706492,3706734-3706818,
           3707424-3707472,3707566-3707639,3707775-3707849,
           3708186-3708240,3708318-3708391,3708607-3708753,
           3709419-3709493,3709527-3709648,3709749-3709929
          Length = 345

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 388 INSTFIWVFSW*PSDASSRCASLAVSDVSSSNGI 489
           I + F+W  SW    + S C+SL+ S   S   +
Sbjct: 115 IGTVFVWYNSWTDHASKSSCSSLSTSTQESEEDV 148


>01_06_0227 -
           27686525-27686607,27686731-27686803,27687027-27687315,
           27687755-27687832,27687869-27687992,27688796-27688940,
           27689046-27689166,27689386-27689542,27690704-27690840,
           27691863-27692122,27692199-27692387,27692572-27692775,
           27693390-27693436,27694435-27694462
          Length = 644

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 25  ALVLKMLVKLSFPCFLSEYPDVDMLRC-KEINYF 123
           ALV+K +  L F CF S  PDV   R   E N+F
Sbjct: 84  ALVIKKIAGLVFDCFKSLDPDVSPARSPTEDNHF 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,646,888
Number of Sequences: 37544
Number of extensions: 298113
Number of successful extensions: 811
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)