Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_F14
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 156 1e-39
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 156 1e-39
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 3.0
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 3.9
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 25 5.2
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 24 6.9
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 6.9
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom... 24 6.9
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 24 6.9
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 24 6.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 24 6.9
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 156 bits (378), Expect = 1e-39
Identities = 67/105 (63%), Positives = 84/105 (80%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 243
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 244 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAXYSTGLLL 378
TCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ A Y+TGLL+
Sbjct: 61 TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLV 105
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 156 bits (378), Expect = 1e-39
Identities = 67/105 (63%), Positives = 84/105 (80%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 243
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 244 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAXYSTGLLL 378
TCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ A Y+TGLL+
Sbjct: 61 TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLV 105
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 3.0
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 192 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVAS 34
F +L T + +SF F+T + + + LF H F+ S ++ N+ Y+V S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS 524
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +1
Query: 232 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 354
N+D + + D VC +++ + YG + G +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 24.6 bits (51), Expect = 5.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +1
Query: 79 VVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYN 198
+ K + +YQ K + E T Y RK+ +++ + K N
Sbjct: 485 IEKEEGELTKYQTLVKSKTEILTQLYTRKKQLLEQQGKGN 524
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 24.2 bits (50), Expect = 6.9
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 162 TSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK--VASTDRTTKLKRK 4
T + + F TP+ F ++PL+VL + +++ + K +T T++K+K
Sbjct: 138 TRVHVCLYFITPVSFGMLPLDVLAMKELSTHVNLVPVIAKADTFTTPELTQIKQK 192
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.2 bits (50), Expect = 6.9
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 192 FVLVLNNEAFTSII--ISFPFTTPLEFYLVPLEVLFVLHNFNE 70
F L LN + F+ ++ + FPF +P++ E+ +LHN +
Sbjct: 1136 FELTLNYD-FSELLTKVVFPFLSPVDTITAEQEMRDLLHNIRQ 1177
>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 375
Score = 24.2 bits (50), Expect = 6.9
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -1
Query: 192 FVLVLNNEAFTSIIISFPFTTPLEFYL 112
F +++++E + I +PF P+E +L
Sbjct: 104 FSIIIHSEDQVNSFIKYPFNRPVEIWL 130
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 352 QHNLSDQPSHHNVATHVNKQRTQYGHLQSESR 257
QH LSDQP N + R + + S+SR
Sbjct: 831 QHKLSDQPRSRNNSISNVSHRERSNSVSSKSR 862
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 253 PGMLHLCWRDAQSDDI 206
PG L L W AQ DDI
Sbjct: 263 PGQLSLAWLLAQGDDI 278
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 88 NKQYFKRYQV--KFKRRREGKTDYYARKRLVVQDKNKYNTP 204
+ Y + + V ++KRR TD+ + V D++K++ P
Sbjct: 882 SSSYLEEWNVFAQYKRRESNATDFEDFRSQVGDDESKFDEP 922
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,214
Number of Sequences: 5004
Number of extensions: 34409
Number of successful extensions: 92
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -