Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_F08
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 1.4
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 27 1.8
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 27 2.4
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 26 3.2
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 26 4.2
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 26 4.2
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass... 26 4.2
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 25 7.4
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 25 7.4
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 9.8
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 9.8
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 9.8
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 262 ISKINKQSLEMENTSPTI---FTVKDLTDEDKLLPPILNLSESDSNDEETPKVAVKK 423
++ I KQ E EN + + + DL +K+ P E S++E PK +KK
Sbjct: 28 VAVIRKQKTEQENNNLSWEDRHYIPDLHKSNKIKTPTSLADEKKSHNELDPKAQIKK 84
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 1.8
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Frame = +1
Query: 250 AKRLISKINKQSLEMENTSPTIFTVKDLTDEDKL-------LPPILNLSE-----SDSND 393
+K + SKINK S + ENT + T++ KL LP LS+ ++ D
Sbjct: 7 SKPVGSKINKHSYQDENTLVGKQALSKGTEKTKLSTNFEINLPRRTVLSDVSNVGKNNAD 66
Query: 394 EETPKVAVKKFTPPIADVREQTTDSDEGSQMNYKDVWSQNVDQSEE 531
E+ K A + F E+ E + V+S+N D S E
Sbjct: 67 EKDTKKAKRSFDESNLSTNEEADKPVESKFVKKLKVYSKNADPSVE 112
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 247 FAKRLISKIN-KQSLEMENTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPK 408
F RL K + K S+EM+ S +K + ++ K L P+ S+SD +P+
Sbjct: 277 FFLRLFQKPDWKCSIEMDVVSSDRTEIKHMYEKSKNLAPMSESSDSDKTVSTSPE 331
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 85 MKKPVILVTQGSEAHISDVPSSEDEAEELPETSEDE 192
++KP + T G + + +P EDE E L + E++
Sbjct: 79 VEKPTLSATVGRVSFLKKMPKLEDEEEILAKKREEQ 114
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 281 NLSKWKIHLQRSSQLKTLQMKINFFHPYSIYLKVIV 388
NL W + +Q+ S Q+ I + SIYL I+
Sbjct: 536 NLQHWDVKVQQLSAFSLRQLSIKYPKELSIYLPPIL 571
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 262 ISKINKQ-SLEMENTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEET 402
+SK +Q S +M+ T P + L +D++ P +NL E+DS D+ T
Sbjct: 65 LSKAEQQKSAKMKITEPKTPFQRFLLPDDEV--PEINLDETDSKDDFT 110
>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
assembly of the V-ATPase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 262 ISKINKQSLEMENTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEET 402
+ +I++ S +NT+ +I K+L D LLP + +S ++++
Sbjct: 31 LGEIDENSHTQDNTTTSILKEKELYDGIPLLPSMAGVSMDPEREKKS 77
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 460 TDSDEGSQMNYKDVWSQNVDQSEEI 534
TD+ + + +DV+SQN D+S E+
Sbjct: 263 TDNVVENSLQTEDVYSQNQDESSEV 287
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Frame = +1
Query: 256 RLISKINKQSLEMENTSP------TIFTVKDL-TDEDKLLPPILNLSESDSNDEE 399
RL+ + KQ E E+TSP + T++ L E+ PP++ S+ E+
Sbjct: 126 RLVQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSSSSEQ 180
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +1
Query: 262 ISKINKQSLEMENTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPKVAV 417
+ +IN ++ ++ + IF L +++K P +NLS + DE P++AV
Sbjct: 175 VFEINMENAKIRHLPSVIFD--GLIEKNKDRPYHINLSCKRAYDELLPRIAV 224
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.6 bits (51), Expect = 9.8
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 313 IFTVKDLTDEDKLLPPI--LNLSESDSNDEETPKVAVKKFTPPIADV 447
I + +DL + L + + L ESD EET +V +KF PI +
Sbjct: 1413 IMSAEDLEVRSRALQNLFYIFLEESDDFTEETWEVVSRKFIFPIFSI 1459
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 42 RKKVIKTVYKHEDSDEETGDFSDS 113
R++++ + E+ DEE DF DS
Sbjct: 387 RQQLLSRKEEEEEEDEEASDFEDS 410
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 547 KAXLLFPH-SDQHFVTKHLCNSFESLHHCQ 461
+A +L P+ ++ + KH+ N F +HH +
Sbjct: 131 RAEVLIPNIAEALIILKHMTNEFVEIHHLE 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,155
Number of Sequences: 5004
Number of extensions: 41196
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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