Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_F08
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541... 30 1.1
08_02_1374 + 26519720-26519989,26520679-26520737,26520810-265209... 29 2.5
06_03_0830 + 25159758-25162460 29 2.5
07_01_0278 + 2039873-2039896,2040342-2040407,2040842-2040903,204... 28 4.3
03_04_0050 + 16847849-16847978,16848744-16848898,16849207-16849440 28 5.7
10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251 27 7.5
09_01_0016 - 376742-376883,377973-378964 27 7.5
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 27 7.5
12_02_1199 + 26928685-26929671 27 10.0
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278... 27 10.0
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 10.0
>08_01_0620 -
5416197-5416225,5416333-5416652,5417144-5417235,
5417304-5417394,5417489-5417577,5417812-5417929,
5418007-5418098,5418180-5418215,5418323-5418403,
5418510-5418617,5418809-5418901,5419045-5419146,
5419345-5419449,5419526-5419612,5419952-5420227
Length = 572
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 373 SESDSND-EETPKVAVKKFTPPIADVREQTTDSDEGS 480
SE DS++ EE KV VKK T P+ SDE S
Sbjct: 82 SEEDSSESEEEVKVQVKKTTKPVKQESSSDESSDESS 118
>08_02_1374 +
26519720-26519989,26520679-26520737,26520810-26520924,
26521092-26521136,26521424-26521477
Length = 180
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 537 CYFLTLINIL*PNIFVIHLRAFITVSGLFSDISYWRCEFFHSYLW 403
C+ TL++I P++ H AF V GL+ I C F +LW
Sbjct: 20 CWHHTLLDIAKPHLMHFH-GAFSFVCGLYDAIQDGGCVRFGEWLW 63
>06_03_0830 + 25159758-25162460
Length = 900
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +1
Query: 358 PILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSDEGSQMNYKDVWSQNVDQS 525
P +N SDS D E + P D + TT D GS + K+ S D S
Sbjct: 431 PDINSRRSDSPDLEARRQPEPPMDEPDNDNKSSTTGEDSGSSSSMKEDGSGITDDS 486
>07_01_0278 +
2039873-2039896,2040342-2040407,2040842-2040903,
2042839-2043067,2043787-2044014,2044177-2044469,
2044594-2044909
Length = 405
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 331 LTDEDKLLPPILNLSESDSNDEETPKVAVKKFTPP----IADVREQTTDSDEGS 480
L+D D + P N+ + D + + P + V ++ P ++DVRE TT+ ++ S
Sbjct: 336 LSDTDPI-PITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNS 388
>03_04_0050 + 16847849-16847978,16848744-16848898,16849207-16849440
Length = 172
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 322 VKDLTDEDKLLPPILNLSESDSNDEETPKVAVKKFTPPIA 441
V+++TD D + P L++ ESD D E +V+ + PP A
Sbjct: 58 VRNVTDNDGFVIPSLSVEESDLGDWEAAQVS-RPQPPPKA 96
>10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251
Length = 148
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +1
Query: 313 IFTVKDLTDEDKLLPPILNLSESDSNDEETPKVAV---KKFTP 432
+F++KD+ ++ K + + S+SDSN ++ +V + +KF P
Sbjct: 18 VFSIKDIYEDAKSIISPSSYSDSDSNSDDEMEVVLMLARKFGP 60
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 376 ESDSNDEET-PKVAVKKFTPPIADVREQTTDSDEG 477
ESDS+D+ET P + K P D + +SD G
Sbjct: 167 ESDSSDDETLPALQANKNASPSDDDEDDDQESDSG 201
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 421 KFTPPIADVREQTTDSDEGSQMNYKDVWSQNVDQSEEIAXR 543
K +PPI D+D+ S +NY S N D +IA R
Sbjct: 66 KGSPPILGDESDDVDADDASDVNYPT--SGNQDHKHKIAER 104
>12_02_1199 + 26928685-26929671
Length = 328
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +1
Query: 304 SPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPKVAVKKFTPPIADV-----REQTTDS 468
S ++F ++ + L P + + E P + + PI + R + DS
Sbjct: 132 SLSLFWIESVRSSSSRLRPRPRSTPAAETAAELPDLRGRGVVSPIREAAAATPRPSSADS 191
Query: 469 DEGSQMNYKDVWSQNVDQSE 528
D GS+++ +W+ + S+
Sbjct: 192 DVGSEVSVSSIWTDGDEMSQ 211
>08_01_1011 +
10226160-10226676,10226794-10226810,10227677-10227886,
10227921-10228406
Length = 409
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 64 CTNMKIVMKKPVILVTQGSEAHISDVP-SSEDEAEELPETSEDE 192
C N+K + + I ++ E I + P +SEDE +E P SEDE
Sbjct: 239 CYNLKTSLGQ--IAYSEWDEDEIDEDPLNSEDEIDEDPLNSEDE 280
>01_05_0740 -
24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 293 WKIHLQRSSQLKTLQMKINFFHPYSIYLKVIVMMKKLQR 409
WK HLQ S + +Q+K P+ + +V +K+++R
Sbjct: 629 WKEHLQVSGWIDIMQLKERSEQPHGTWEEVYRNVKRVER 667
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,300
Number of Sequences: 37544
Number of extensions: 227281
Number of successful extensions: 611
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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