Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_F08
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40059-3|AAP68936.1| 280|Caenorhabditis elegans Forkhead transc... 31 0.42
U40059-2|AAA81139.2| 300|Caenorhabditis elegans Forkhead transc... 31 0.42
AC024876-6|AAS80337.1| 181|Caenorhabditis elegans Hypothetical ... 31 0.55
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 31 0.73
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 31 0.73
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 29 1.7
U41554-1|AAA83296.2| 556|Caenorhabditis elegans Hypothetical pr... 29 2.9
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 28 3.9
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 28 3.9
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 28 3.9
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 28 5.1
Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical pr... 28 5.1
AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein. 28 5.1
Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical p... 27 6.8
U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-l... 27 6.8
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l... 27 6.8
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 27 6.8
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto... 27 6.8
AF213473-1|AAL50027.1| 913|Caenorhabditis elegans basic helix-l... 27 6.8
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 27 9.0
U64859-3|AAC69093.2| 447|Caenorhabditis elegans Innexin protein... 27 9.0
AF106583-12|AAD03133.1| 432|Caenorhabditis elegans Hypothetical... 27 9.0
AC087794-2|AAG53703.2| 840|Caenorhabditis elegans Hypothetical ... 27 9.0
AC024857-3|AAK31568.6| 611|Caenorhabditis elegans Hypothetical ... 27 9.0
>U40059-3|AAP68936.1| 280|Caenorhabditis elegans Forkhead
transcription factor familyprotein 9, isoform b protein.
Length = 280
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 343 DKLLPPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSDEGSQMNYKDVWSQNVDQ 522
D L PI S SD+ ETP + +P + ++D+ E ++YKD+ + +D+
Sbjct: 2 DLLRSPIQIPSASDTIKIETPSTISSQPSPIQTPLAAASSDNFERPSLSYKDLIIEAIDR 61
Query: 523 SEE 531
S E
Sbjct: 62 SPE 64
>U40059-2|AAA81139.2| 300|Caenorhabditis elegans Forkhead
transcription factor familyprotein 9, isoform a protein.
Length = 300
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 343 DKLLPPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSDEGSQMNYKDVWSQNVDQ 522
D L PI S SD+ ETP + +P + ++D+ E ++YKD+ + +D+
Sbjct: 22 DLLRSPIQIPSASDTIKIETPSTISSQPSPIQTPLAAASSDNFERPSLSYKDLIIEAIDR 81
Query: 523 SEE 531
S E
Sbjct: 82 SPE 84
>AC024876-6|AAS80337.1| 181|Caenorhabditis elegans Hypothetical
protein Y94H6A.10 protein.
Length = 181
Score = 31.1 bits (67), Expect = 0.55
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 253 KRLISKINKQSLEMENTSPTIFTVKDLTDEDKLLPPILN-LSESDSNDEETPKVAVKKFT 429
++L +++ KQ E E + KD+ +DK P+ L ESD V+K
Sbjct: 51 RKLTTQMQKQGWECEAHITSFIFYKDMASDDKKSDPVEKALKESD---------LVEKAH 101
Query: 430 PPIADVREQTTDSDEGSQMNY 492
I+ E+TT + EG+Q Y
Sbjct: 102 KEISVAIEETTKTYEGAQFQY 122
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
protein F13B9.1c protein.
Length = 1609
Score = 30.7 bits (66), Expect = 0.73
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 268 KINKQSLEMENTSPTIFTVKDLTDEDK-LLPPILNLSESDS---NDEETPKVAVKKFTPP 435
+++ T+PTI T+ T+ED+ P NLS++ S N ++P A+ TP
Sbjct: 365 RVSMSEFPNHETTPTIVTMSVSTNEDRQKTPEAGNLSQNTSIVLNTTDSPLEAIATSTPK 424
Query: 436 IADVREQTTDSDEGS 480
++++ S +G+
Sbjct: 425 EIKPEKRSSVSSQGT 439
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
protein F13B9.1b protein.
Length = 1614
Score = 30.7 bits (66), Expect = 0.73
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 268 KINKQSLEMENTSPTIFTVKDLTDEDK-LLPPILNLSESDS---NDEETPKVAVKKFTPP 435
+++ T+PTI T+ T+ED+ P NLS++ S N ++P A+ TP
Sbjct: 365 RVSMSEFPNHETTPTIVTMSVSTNEDRQKTPEAGNLSQNTSIVLNTTDSPLEAIATSTPK 424
Query: 436 IADVREQTTDSDEGS 480
++++ S +G+
Sbjct: 425 EIKPEKRSSVSSQGT 439
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
protein F13B9.1a protein.
Length = 1632
Score = 30.7 bits (66), Expect = 0.73
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 268 KINKQSLEMENTSPTIFTVKDLTDEDK-LLPPILNLSESDS---NDEETPKVAVKKFTPP 435
+++ T+PTI T+ T+ED+ P NLS++ S N ++P A+ TP
Sbjct: 365 RVSMSEFPNHETTPTIVTMSVSTNEDRQKTPEAGNLSQNTSIVLNTTDSPLEAIATSTPK 424
Query: 436 IADVREQTTDSDEGS 480
++++ S +G+
Sbjct: 425 EIKPEKRSSVSSQGT 439
>Z66565-4|CAA91480.1| 384|Caenorhabditis elegans Hypothetical
protein T04F8.4 protein.
Length = 384
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 322 VKDLTDEDKLLPPILNLSESDSNDEETPKVAVKKFTPPIADVREQT 459
+KD D + PP+ + +++SN+++ K + F P AD+ QT
Sbjct: 266 LKDDGGCDGITPPMCSFKDANSNEKQIVKRNARTFKPKDADMFSQT 311
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +1
Query: 355 PPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSDEGSQMNYKDVWSQNVDQ 522
PP +S+ N ET + ++ PP+ + D + +Q Y+D+ D+
Sbjct: 788 PPGFGRPKSEENPRETGRTYSEEAMPPVQQTEKYNGDKRKKNQPEYEDISKPEEDK 843
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +2
Query: 149 LKMKLRN-YQKRLKMNLSQKP--KRTPRNLNHRRNRSPKD*LAK*INNLSKWKIHLQRSS 319
L++ RN Y + +M P + P L HRR+ PKD +K L + H+ +SS
Sbjct: 616 LRLDNRNRYTFQFEMCFENIPLVRDVPHGLPHRRDGEPKDRTSKDATWLQELN-HINQSS 674
Query: 320 QLKTLQMKINFFHPYSIYLKVI 385
K +++ I+ Y KV+
Sbjct: 675 PEKLVELIIHRLMRYLYMYKVV 696
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +2
Query: 149 LKMKLRN-YQKRLKMNLSQKP--KRTPRNLNHRRNRSPKD*LAK*INNLSKWKIHLQRSS 319
L++ RN Y + +M P + P L HRR+ PKD +K L + H+ +SS
Sbjct: 616 LRLDNRNRYTFQFEMCFENIPLVRDVPHGLPHRRDGEPKDRTSKDATWLQELN-HINQSS 674
Query: 320 QLKTLQMKINFFHPYSIYLKVI 385
K +++ I+ Y KV+
Sbjct: 675 PEKLVELIIHRLMRYLYMYKVV 696
>U41554-1|AAA83296.2| 556|Caenorhabditis elegans Hypothetical
protein F57C12.2 protein.
Length = 556
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 253 KRLISKINKQSLEMENTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPKV 411
K LI K N+ +L++EN +I + + K+ L S+ N +TP V
Sbjct: 28 KALIQKYNEANLKVENQKKSITQLHGAIQKLKMEKQNLETQLSEKNSPKTPNV 80
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 370 LSESDSNDEETPKVAVKKFTPPIADVREQTTDSDEGS 480
+S+SD +D+E PK KK P +E++ +S+ GS
Sbjct: 656 ISDSDDSDDEEPKKKEKKAAP-----KEESEESNNGS 687
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 355 PPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSD--EGSQMNYKDVWSQNVDQSE 528
P ++ +E+ EETP V++ P+A +E++T D E + ++ VD E
Sbjct: 304 PVVIEETEAPVVVEETPAPVVEETQAPVAAAKEESTYDDIVEEQPSTATETATEQVDTVE 363
Query: 529 E 531
E
Sbjct: 364 E 364
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 355 PPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSD--EGSQMNYKDVWSQNVDQSE 528
P ++ +E+ EETP V++ P+A +E++T D E + ++ VD E
Sbjct: 244 PVVIEETEAPVVVEETPAPVVEETQAPVAAAKEESTYDDIVEEQPSTATETATEQVDTVE 303
Query: 529 E 531
E
Sbjct: 304 E 304
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 274 NKQSLEMENTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPKVAVKKFTPP 435
N + E T PT TV T K PP +++ E PK+ + PP
Sbjct: 345 NDGATEAATTKPTTTTVTTTTVPPKTDPPRTEPPKTEPPTTEPPKIEPPRTEPP 398
>Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical
protein C25A1.10a protein.
Length = 971
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 373 SESDSNDEETP--KVAVKKFTPPIADVREQTTDSDE 474
S SDS+D+E P K K P+A E ++DS +
Sbjct: 282 SSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSD 317
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 373 SESDSNDE---ETPKVAVKKFTPPIADVREQTTDSDEGSQ 483
S+SDS+DE + P V K P+A ++ T+DSD S+
Sbjct: 149 SDSDSDDEPPKKAPAVTTKVAPKPMAK-KQDTSDSDSDSE 187
>Z35639-8|CAI46560.1| 634|Caenorhabditis elegans Hypothetical
protein D2045.1b protein.
Length = 634
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/64 (21%), Positives = 25/64 (39%)
Frame = +1
Query: 298 NTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSDEG 477
N P V + + PP N E+++ EE P +V P+ +V+ E
Sbjct: 86 NRGPPSSLVAKGSSNESTPPPTTNGEEAETKKEEAPSTSVDVAAAPVQNVQNDAEKHQED 145
Query: 478 SQMN 489
++
Sbjct: 146 DNVS 149
>Z35639-7|CAA84697.3| 959|Caenorhabditis elegans Hypothetical
protein D2045.1a protein.
Length = 959
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/64 (21%), Positives = 25/64 (39%)
Frame = +1
Query: 298 NTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSDEG 477
N P V + + PP N E+++ EE P +V P+ +V+ E
Sbjct: 411 NRGPPSSLVAKGSSNESTPPPTTNGEEAETKKEEAPSTSVDVAAAPVQNVQNDAEKHQED 470
Query: 478 SQMN 489
++
Sbjct: 471 DNVS 474
>AY571963-1|AAS78587.1| 959|Caenorhabditis elegans ATX-2 protein.
Length = 959
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/64 (21%), Positives = 25/64 (39%)
Frame = +1
Query: 298 NTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSDEG 477
N P V + + PP N E+++ EE P +V P+ +V+ E
Sbjct: 411 NRGPPSSLVAKGSSNESTPPPTTNGEEAETKKEEAPSTSVDVAAAPVQNVQNDAEKHQED 470
Query: 478 SQMN 489
++
Sbjct: 471 DNVS 474
>Z81038-14|CAI79153.1| 696|Caenorhabditis elegans Hypothetical
protein C25A1.10b protein.
Length = 696
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +1
Query: 373 SESDSNDE---ETPKVAVKKFTPPIADVREQTTDSDEGSQ 483
S+SDS+DE + P V K P+A ++ T+DSD S+
Sbjct: 149 SDSDSDDEPPKKAPAVTTKVAPKPMAK-KQDTSDSDSDSE 187
>U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-like
protein 1, isoformb protein.
Length = 937
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 110 LRXQKRTFLMCQALKMKLRNYQKRLKMNLSQKPKRT 217
L+ +++ + + ++ KLR+Y+ +K+ SQ PK T
Sbjct: 208 LKRKRKHTVPKETIESKLRSYEPPVKLQRSQTPKHT 243
>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
protein 1, isoforma protein.
Length = 1009
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 110 LRXQKRTFLMCQALKMKLRNYQKRLKMNLSQKPKRT 217
L+ +++ + + ++ KLR+Y+ +K+ SQ PK T
Sbjct: 208 LKRKRKHTVPKETIESKLRSYEPPVKLQRSQTPKHT 243
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
protein T26A5.5a protein.
Length = 1076
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 82 VMKKPVILVTQGSEAHISDVPSSEDEAEELPETSEDEF 195
V KP+IL Q S + +P+ +DE +E E+EF
Sbjct: 561 VTDKPIILPQQPSSGPLEYLPAPKDEIKEDINGFEEEF 598
>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
protein.
Length = 1009
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 110 LRXQKRTFLMCQALKMKLRNYQKRLKMNLSQKPKRT 217
L+ +++ + + ++ KLR+Y+ +K+ SQ PK T
Sbjct: 208 LKRKRKHTVPKETIESKLRSYEPPVKLQRSQTPKHT 243
>AF213473-1|AAL50027.1| 913|Caenorhabditis elegans basic
helix-loop-helix leucinezipper WBSCR14-like protein
protein.
Length = 913
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 110 LRXQKRTFLMCQALKMKLRNYQKRLKMNLSQKPKRT 217
L+ +++ + + ++ KLR+Y+ +K+ SQ PK T
Sbjct: 112 LKRKRKHTVPKETIESKLRSYEPPVKLQRSQTPKHT 147
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 319 TVKDLTDE-DKLLPPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDS 468
T D DE DK++ LN+S+ S+ + + +K+ T D EQ +S
Sbjct: 12 TGPDSNDEYDKIMEQALNISDQVSDSQSMILIGLKRTTECTTDSGEQDQNS 62
>U64859-3|AAC69093.2| 447|Caenorhabditis elegans Innexin protein 5
protein.
Length = 447
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 337 DEDKLLPPILNLSESDSNDEETPKVAVKKFTPPIADVREQTTDSDE 474
D+D LP + + +D++TP F PP V E T DE
Sbjct: 391 DDDSALPASAPVDLQEDDDDDTP------FPPPTKAVAETLTSDDE 430
>AF106583-12|AAD03133.1| 432|Caenorhabditis elegans Hypothetical
protein F23C8.11 protein.
Length = 432
Score = 27.1 bits (57), Expect = 9.0
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = +1
Query: 271 INKQSLEMENTSPTIFTVKDLTDEDKLLPPILNLSESDSNDEETPKVAVKKFTPPIADVR 450
I+ QS E N + K DE++ I ESD +DEE + V++ +AD
Sbjct: 24 ISCQSKETGNRGKSYNEDKSSDDEEEDEEVIDEEDESDGDDEEVHEEYVQQ---ELADEN 80
Query: 451 EQTTDSDEGSQMNYKD 498
DEG N +D
Sbjct: 81 HFDYSYDEGHNFNRQD 96
>AC087794-2|AAG53703.2| 840|Caenorhabditis elegans Hypothetical
protein Y32G9A.6 protein.
Length = 840
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +1
Query: 322 VKDLTDEDKLLPPILNLSESDS---NDEETPK 408
+ D+ DE + LPPI +LSES + ND E K
Sbjct: 530 ILDVDDEFENLPPISDLSESSTSTDNDSEEDK 561
>AC024857-3|AAK31568.6| 611|Caenorhabditis elegans Hypothetical
protein Y71G12A.2 protein.
Length = 611
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 125 RTFLMCQALKMKLRNYQKRLKMN 193
R +L+CQ + M + YQ+++K N
Sbjct: 296 RNYLLCQQIIMSIHLYQQKMKSN 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,625,547
Number of Sequences: 27780
Number of extensions: 233584
Number of successful extensions: 962
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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