Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F07
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       28   0.077
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   3.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   3.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   3.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   3.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   3.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   3.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   3.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   5.1  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 0.077
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 324 NTPRKPGRTRSHEHSSDKRQVAPHLSRLRSAGRGDGH 434
           N PR P R RS  +S+  + V PH    +  G GD H
Sbjct: 54  NNPRDPNRARSVSYSTVIQSV-PHPETEKDWGDGDKH 89


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 381 QVAPHLSRLRSAGRGDGHPLPRTLHHLRQAXPQ--ADHHQRPARGXVXGRKTCGWCRPSS 554
           QVAP   +   A    GH L  T+    Q  PQ  A  H +          +C +   +S
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTS 106

Query: 555 S 557
           S
Sbjct: 107 S 107


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 381 QVAPHLSRLRSAGRGDGHPLPRTLHHLRQAXPQ--ADHHQRPARGXVXGRKTCGWCRPSS 554
           QVAP   +   A    GH L  T+    Q  PQ  A  H +          +C +   +S
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTS 106

Query: 555 S 557
           S
Sbjct: 107 S 107


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 381 QVAPHLSRLRSAGRGDGHPLPRTLHHLRQAXPQ--ADHHQRPARGXVXGRKTCGWCRPSS 554
           QVAP   +   A    GH L  T+    Q  PQ  A  H +          +C +   +S
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTS 106

Query: 555 S 557
           S
Sbjct: 107 S 107


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 381 QVAPHLSRLRSAGRGDGHPLPRTLHHLRQAXPQ--ADHHQRPARGXVXGRKTCGWCRPSS 554
           QVAP   +   A    GH L  T+    Q  PQ  A  H +          +C +   +S
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTS 106

Query: 555 S 557
           S
Sbjct: 107 S 107


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 381 QVAPHLSRLRSAGRGDGHPLPRTLHHLRQAXPQ--ADHHQRPARGXVXGRKTCGWCRPSS 554
           QVAP   +   A    GH L  T+    Q  PQ  A  H +          +C +   +S
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTS 106

Query: 555 S 557
           S
Sbjct: 107 S 107


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 381 QVAPHLSRLRSAGRGDGHPLPRTLHHLRQAXPQ--ADHHQRPARGXVXGRKTCGWCRPSS 554
           QVAP   +   A    GH L  T+    Q  PQ  A  H +          +C +   +S
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTS 106

Query: 555 S 557
           S
Sbjct: 107 S 107


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 381 QVAPHLSRLRSAGRGDGHPLPRTLHHLRQAXPQ--ADHHQRPARGXVXGRKTCGWCRPSS 554
           QVAP   +   A    GH L  T+    Q  PQ  A  H +          +C +   +S
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTS 106

Query: 555 S 557
           S
Sbjct: 107 S 107


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 381 QVAPHLSRLRSAGRGDGHPLPRTLHHLRQAXPQ--ADHHQRPARGXVXGRKTCGWCRPSS 554
           QVAP   +   A    GH L  T+    Q  PQ  A  H +          +C +   +S
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLAPTHLQSPNTQTHPSASCKYADSTS 106

Query: 555 S 557
           S
Sbjct: 107 S 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,388
Number of Sequences: 336
Number of extensions: 2327
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)