Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_F07
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 118 7e-28
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 28 1.4
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 4.1
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 4.1
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 26 4.1
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 5.5
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 26 5.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.2
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 7.2
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 9.5
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 9.5
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 25 9.5
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 118 bits (284), Expect = 7e-28
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +3
Query: 93 PLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 272
P P FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A +F +
Sbjct: 8 PAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNA 67
Query: 273 EVLGAPXDSHFTHLAWINTPRKPG 344
+V+ DS ++HLA+INTPRK G
Sbjct: 68 QVILTSTDSEYSHLAFINTPRKEG 91
Score = 91.5 bits (217), Expect = 1e-19
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = +1
Query: 340 QGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIYDKQXLRQITINDLPVGXSV 519
+GGLG +NIPL++D SH++SRDYGVL E+ G+ FRGLF+I K LRQITINDLPVG SV
Sbjct: 90 EGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLFLIDPKGVLRQITINDLPVGRSV 149
Query: 520 E 522
+
Sbjct: 150 D 150
Score = 56.0 bits (129), Expect = 4e-09
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +2
Query: 503 PWGXXWKENLRLVQAFQFTDKHGXVCPANWXXGAKTIKPDTKAAQEYFGE 652
P G E LRL+ AFQF ++HG VCPANW G+ TI DTK ++YF +
Sbjct: 144 PVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI--DTKNPEKYFSK 191
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 204 TFVCPTEIIAFSEKADEFRKIGCEVLGAPXDSHFT 308
TF T + E DEF ++G +VLG P D+ T
Sbjct: 556 TFGGQTALNVGIELKDEFEQLGVKVLGTPIDTIIT 590
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -3
Query: 545 PAPAAGFPSTDXPTGRSLMVICLRXCLS*MMKSPRKGMPVSSSSTP*SREMRCDLSLIRG 366
PA + F T GR+ + ++ R+G+ V+ + SR D + +R
Sbjct: 656 PAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRH 715
Query: 365 MFMGPS 348
M MGPS
Sbjct: 716 MIMGPS 721
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 333 RKPGRTRSHEHSSDKRQVAPHLSRLRSAGRGDGHPLPRTLHHLRQAXPQADHHQRP 500
+K R+ H H + + H R S G H +LH QA P A ++P
Sbjct: 447 QKAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 606 LAPXXQLAGHTSPCLSVNW 550
L P +L HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 257 ELVRLLRERDNLRRAHEREVQRIEEQHNIFPLVVRQRNV 141
E +LLRE +N+++ +RE EE++ R+R +
Sbjct: 166 ETQQLLRELENIKQERKREQMLQEEKNRALEQEKREREI 204
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 90 NPLPXFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 224
+P P F+ + +G+F S + K K V L YP TF TE
Sbjct: 270 SPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -1
Query: 178 TTYFPL*SDREMSLNSPLTTAVALXLGSGFGHLQ 77
T F + D++M +N L TAV GSG G Q
Sbjct: 1444 TGAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQ 1477
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 579 HTSPCLSVNWKACTSRRFSFHXXPHGQV 496
H L + WKA T+ +FS + +G++
Sbjct: 1273 HLQSILLLTWKAITTTKFSIYEDSNGEM 1300
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 306 THLAWINTPRKPGRTRSHEHSSDKRQ 383
T + ++P PG +RSH+ SDK +
Sbjct: 57 TPFSIFDSPSNPGFSRSHQMCSDKNK 82
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 343 GGLGPMNIPLISDKS 387
GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 477 EALLVVDDEESSEGDARLLVQHSVV 403
+ALL D+E+S GDA +L + V+
Sbjct: 252 DALLSADEEDSFYGDALVLFEELVI 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,536
Number of Sequences: 5004
Number of extensions: 38645
Number of successful extensions: 116
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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