Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F03
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    81   5e-17
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   1.5  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   4.7  
SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    25   6.2  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   6.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.2  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    24   8.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   8.2  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 81.4 bits (192), Expect = 5e-17
 Identities = 40/73 (54%), Positives = 52/73 (71%)
 Frame = +3

Query: 180 RKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRK 359
           RK IAR+  V ++  ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   KT K+I+K
Sbjct: 50  RKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKK 109

Query: 360 KSLFPPRVYAVKA 398
           +  FP R YA+KA
Sbjct: 110 ERYFPLRKYALKA 122


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -3

Query: 410 IIYSSFNGIDSRW---EERFLSDLFPRLDLCF 324
           +++ +F  + + W   E  FLS +FPR   CF
Sbjct: 246 VVFGAFPSLHAGWAMLEALFLSHVFPRYRFCF 277


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 255 KKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKS 365
           K Y+P   R   ++++   +TK   K   +K  +K S
Sbjct: 171 KSYRPKASRTTSSQSVASTMTKSSTKTSKKKSSKKNS 207


>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 12/54 (22%), Positives = 23/54 (42%)
 Frame = +3

Query: 207 VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSL 368
           V+   + V LR H   +  +   +    +  +    + H AK+K R+ +R   L
Sbjct: 102 VHEIPLGVPLRLHQSKQALRAKAIAESSSTKLESRKSAHNAKVKQRQRLRASGL 155


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 240 NHYKNKKYKPLDLRAKKTRAMRKAL---TKHEAK 332
           +H KN++Y  L+ + +K     KAL   TKH  K
Sbjct: 35  SHIKNRQYYILEKKIRKLMFAMKALLEETKHSTK 68


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +3

Query: 207 VYHQKMKVN---LRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 332
           VYHQK K+N   L    + +K  PL+ R      + K +T    K
Sbjct: 79  VYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITNERTK 123


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 215 VIHNVNTCDSFSYNTGSWT 159
           ++H++NT D  +Y TG ++
Sbjct: 535 MLHHINTTDYLNYETGKFS 553


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 273 DLRAKKTRAMRKALTKHEAKIKTRKEIRKKS 365
           D++ K  RAMR+ +   +   +  +++RKK+
Sbjct: 677 DMQTKAKRAMRETMVFWKRNERVERDLRKKA 707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,290
Number of Sequences: 5004
Number of extensions: 20056
Number of successful extensions: 54
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)