Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F03
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    65   2e-11
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    42   3e-04
02_01_0228 + 1507314-1507566,1507645-1507913,1508010-1508213,150...    29   1.5  
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548...    28   2.6  
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618...    28   2.6  
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...    27   4.6  
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...    27   4.6  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    27   4.6  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    27   4.6  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 18/93 (19%)
 Frame = +3

Query: 174 VVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKH---------- 323
           VVR +IARV  V  QK +  LR  YK K   PLDLR KKTRA+R+ LTKH          
Sbjct: 49  VVRTSIARVLTVISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLL 108

Query: 324 --------EAKIKTRKEIRKKSLFPPRVYAVKA 398
                   +  +KT +E +++  FP R YA+KA
Sbjct: 109 TFSMVAISQLSLKTEREKKREKYFPMRKYAIKA 141



 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 29  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGG 145
           M ++K  ELR K+               + LRVAKVTGG
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGG 39


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +3

Query: 219 KMKVNLRNHYKNKKYK--PLDLRAKKTRAMRKALTKHEAKI 335
           K++  LR  YK KK    PLDLR KKT A+R+ LTKH+  +
Sbjct: 155 KVRTALREAYKKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195


>02_01_0228 +
           1507314-1507566,1507645-1507913,1508010-1508213,
           1508323-1508415,1508509-1508604,1508688-1509032,
           1509123-1509191,1509284-1509367,1509455-1509520,
           1509735-1509800,1509934-1509999,1510097-1510162,
           1510280-1510327,1510406-1510468,1510554-1510619,
           1510782-1510841,1511185-1511232,1511315-1511605
          Length = 750

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 228 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKKSLFPPRVYAVKA 398
           + L NH+ N+K K +  + KK    +KA+     K   +TR+E+R+K   P + Y  +A
Sbjct: 230 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQKD--PAKKYPHRA 286


>08_02_0431 +
           17053928-17054189,17054296-17054564,17054661-17054864,
           17054974-17055066,17055160-17055255,17055339-17055683,
           17055935-17056018,17056106-17056171,17056268-17056333,
           17056436-17056501,17056635-17056700,17056798-17056863,
           17056981-17057028,17057107-17057169,17057255-17057320,
           17057483-17057542,17057888-17057935,17058019-17058255,
           17058346-17058366
          Length = 741

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 228 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 362
           + L NH+ N+K K +  + KK    +KA+     K   +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279


>07_01_0794 -
           6179424-6179714,6179797-6179844,6180189-6180248,
           6180411-6180476,6180562-6180624,6180703-6180750,
           6180868-6180933,6181031-6181096,6181230-6181295,
           6181510-6181575,6181663-6181746,6181839-6181907,
           6181998-6182342,6182426-6182521,6182615-6182707,
           6182817-6183020,6183117-6183385,6183492-6183753
          Length = 753

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 228 VNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK--IKTRKEIRKK 362
           + L NH+ N+K K +  + KK    +KA+     K   +TR+E+R+K
Sbjct: 233 IALVNHWMNEKSKRISEQNKKNCQKKKAIHTAGTKSFARTREEMRQK 279


>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 258 KYKPLDLRAKKTRAMRKALTKHEAK-IKTRKEI 353
           KY+P D  AKK R +++A  + E K ++ +K I
Sbjct: 94  KYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI 126


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 258 KYKPLDLRAKKTRAMRKALTKHEAK-IKTRKEI 353
           KY+P D  AKK R +++A  + E K ++ +K I
Sbjct: 78  KYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPI 110


>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
            9625520-9626032,9626801-9629153
          Length = 1342

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +3

Query: 237  RNHYKN--KKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 395
            RNH  N  K   PL  + +K   M+K++     +  T  E  K  +FPP  Y  K
Sbjct: 1048 RNHINNLAKLAGPLYAKLRKN-GMKKSMNYSGVEFFTFGEDNKLKVFPPNTYKFK 1101


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 213 HQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 350
           H K  + ++    NK+   L L+ K+  +  + L + E KI  R+E
Sbjct: 270 HTKATLKIKEDDINKRLAELHLQEKEAESKNRKLEEREKKIAEREE 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,310,637
Number of Sequences: 37544
Number of extensions: 119174
Number of successful extensions: 297
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)