Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F03
         (418 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p pro...   111   4e-25
AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,...   111   4e-25
AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,...   111   4e-25
BT030434-1|ABO52854.1|  492|Drosophila melanogaster IP18315p pro...    31   0.81 

>AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p
           protein.
          Length = 123

 Score =  111 bits (267), Expect = 4e-25
 Identities = 55/75 (73%), Positives = 62/75 (82%)
 Frame = +3

Query: 174 VVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEI 353
           VVRKAIARVYIV HQK K NLR  +KNKKYKPLDLR KKTRA+RKAL+  +A  KT KEI
Sbjct: 49  VVRKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEI 108

Query: 354 RKKSLFPPRVYAVKA 398
           RK+S+FP R +AVKA
Sbjct: 109 RKRSVFPQRKFAVKA 123



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 20/39 (51%), Positives = 21/39 (53%)
 Frame = +2

Query: 29  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGG 145
           M KVKCSELR KD                +LRVAKVTGG
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGG 39


>AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,
           isoform A protein.
          Length = 123

 Score =  111 bits (267), Expect = 4e-25
 Identities = 55/75 (73%), Positives = 62/75 (82%)
 Frame = +3

Query: 174 VVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEI 353
           VVRKAIARVYIV HQK K NLR  +KNKKYKPLDLR KKTRA+RKAL+  +A  KT KEI
Sbjct: 49  VVRKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEI 108

Query: 354 RKKSLFPPRVYAVKA 398
           RK+S+FP R +AVKA
Sbjct: 109 RKRSVFPQRKFAVKA 123



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 20/39 (51%), Positives = 21/39 (53%)
 Frame = +2

Query: 29  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGG 145
           M KVKCSELR KD                +LRVAKVTGG
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGG 39


>AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,
           isoform B protein.
          Length = 123

 Score =  111 bits (267), Expect = 4e-25
 Identities = 55/75 (73%), Positives = 62/75 (82%)
 Frame = +3

Query: 174 VVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEI 353
           VVRKAIARVYIV HQK K NLR  +KNKKYKPLDLR KKTRA+RKAL+  +A  KT KEI
Sbjct: 49  VVRKAIARVYIVMHQKQKENLRKVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEI 108

Query: 354 RKKSLFPPRVYAVKA 398
           RK+S+FP R +AVKA
Sbjct: 109 RKRSVFPQRKFAVKA 123



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 20/39 (51%), Positives = 21/39 (53%)
 Frame = +2

Query: 29  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGG 145
           M KVKCSELR KD                +LRVAKVTGG
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGG 39


>BT030434-1|ABO52854.1|  492|Drosophila melanogaster IP18315p
           protein.
          Length = 492

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 404 YSSFNGIDSRWEERFLSDLFPRLDLCFV 321
           Y++F   + +W +  + D+F RL LCFV
Sbjct: 46  YTTFFDDNIQWSQMVIKDIFQRLQLCFV 73


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,677
Number of Sequences: 53049
Number of extensions: 212263
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1251032760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)