Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_E20
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   166   7e-43
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   166   7e-43
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   2.3  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   4.1  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   5.4  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    24   5.4  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    24   7.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    24   7.1  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  166 bits (404), Expect = 7e-43
 Identities = 71/99 (71%), Positives = 84/99 (84%)
 Frame = +3

Query: 3   RXPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSG 182
           + PIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSG
Sbjct: 29  KAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSG 88

Query: 183 QGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAALGSS 299
           Q AFGNMCR GRMFAPTK WR+WH +VN  ++R A+ S+
Sbjct: 89  QAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASA 127


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  166 bits (404), Expect = 7e-43
 Identities = 71/99 (71%), Positives = 84/99 (84%)
 Frame = +3

Query: 3   RXPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSG 182
           + PIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSG
Sbjct: 29  KAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSG 88

Query: 183 QGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAALGSS 299
           Q AFGNMCR GRMFAPTK WR+WH +VN  ++R A+ S+
Sbjct: 89  QAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSA 127


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 314 PVAATAAAQGRSPLSEVDATVPAPP 240
           PV +T   Q  SP+  V   VPAPP
Sbjct: 395 PVQSTQYYQPSSPVQPVQNGVPAPP 419


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 247  AGTVASTSDSGERPWAAAVAATG 315
            AGTV ST+ SG   +   V ATG
Sbjct: 1085 AGTVTSTTGSGTSWFTTTVPATG 1107


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 177 TYEYHHHGHAEFGRQH 130
           T++Y HH H   G  H
Sbjct: 19  THDYDHHNHDHHGHDH 34


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 249 WHRRVNLRQRRAAL-GSSRCCY 311
           WH R+N R R ++L G +RC +
Sbjct: 446 WHFRINKRIRESSLHGINRCWF 467


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 213 GRMFAPTKPWRRWHRRVNLRQRRAALGSSR 302
           G +  P KP +R+H+   +R R   +  SR
Sbjct: 903 GEIVDPNKPLKRFHKGDKIRVRVLGIHDSR 932


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 171 EYHHHGHAEFGR 136
           E+HHHGH  F +
Sbjct: 5   EHHHHGHNGFSK 16


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,686
Number of Sequences: 5004
Number of extensions: 22194
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)