Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_E20
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   150   2e-37
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.21 
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   4.4  
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    26   5.8  
Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U88167-5|AAB42227.1|  107|Caenorhabditis elegans Hypothetical pr...    26   7.7  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    26   7.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  150 bits (364), Expect = 2e-37
 Identities = 68/99 (68%), Positives = 80/99 (80%)
 Frame = +3

Query: 3   RXPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSG 182
           R PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHRSG
Sbjct: 28  RTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSG 87

Query: 183 QGAFGNMCRGGRMFAPTKPWRRWHRRVNLRQRRAALGSS 299
           QGAFGNMCRGG MFAP K +RRWHR VN+ Q+R A+ S+
Sbjct: 88  QGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +3

Query: 57  NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 227
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 228 PTKP 239
             KP
Sbjct: 197 APKP 200


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 213 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 130
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical
           protein F53B6.9 protein.
          Length = 75

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 222 TYVHHDTCYRRHPDRTYEYHHHGHAEF 142
           TY HH   Y      ++E+HHH H  +
Sbjct: 20  TYAHHSHSY----SHSHEHHHHHHGGY 42


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 144 IPRVRGGGTHRSGQGAFGNMCRGG 215
           +P   GGG   S Q A GN C GG
Sbjct: 26  LPGAGGGGCCSSAQPACGNPCGGG 49


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 222 TYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHW 103
           T VH D  +  H D     HHH  +  G  H  +  +QH+
Sbjct: 34  TVVHTDGGHHGHVDT----HHHEESHHGEHHGGHHGVQHY 69


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 213 HHDTCYRRHPDRTYEYHHHGH 151
           HH   +  H D+   +HHHGH
Sbjct: 698 HHGAHHGHHDDKE-NHHHHGH 717


>Z81027-2|CAB02687.1|  282|Caenorhabditis elegans Hypothetical
           protein AH10.3 protein.
          Length = 282

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 204 TCYRRHPDRTYEYHHHGHAEFGRQHVQY 121
           T  RR  DR Y Y     + F R+H+QY
Sbjct: 94  TSRRRSVDRIYAYKVKVSSIFNRKHLQY 121


>U88167-5|AAB42227.1|  107|Caenorhabditis elegans Hypothetical
           protein D2092.8 protein.
          Length = 107

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 227 PHEALAALAPSRQPPTAESGLGQQPLLLPA 316
           P+ A AA+AP   P  A  G+G QP +  A
Sbjct: 65  PYFAPAAIAPPPPPQGAVIGVGAQPAVYSA 94


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = -2

Query: 213 HHDTCYRRHPDRT--YEYHHHGHAEFGRQHVQYPMIQHWFGDQPPC 82
           HHD    R P R   + +HHHG   F   H  +     W    PPC
Sbjct: 404 HHDG---RSPSRHGHHHHHHHGCRPFPPHHGHHHFPPFW----PPC 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,501,247
Number of Sequences: 27780
Number of extensions: 146127
Number of successful extensions: 596
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)