Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_E20
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   2.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 168 YHHHGHAEFGRQHVQY 121
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 180 GQGAFGNMCRGGRMFAP 230
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
 Frame = -2

Query: 213 HHDTCYRRHPD-RTYEYHHHGHA 148
           HH T    H       +HHH HA
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHA 437


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 125 WTCCRPNSACP 157
           +T C P  ACP
Sbjct: 210 YTACPPTLACP 220


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 98  VTSLLAHAVGLPRVLGHRNVNIIDQ 24
           V  +L+H  G PR++   +    DQ
Sbjct: 330 VAFMLSHPFGTPRIMSSFDFQSKDQ 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,341
Number of Sequences: 438
Number of extensions: 1790
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)