Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_E16
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    28   0.90 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.6  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    25   6.3  
SPAC167.04 |pam17||presequence translocase-associated motor subu...    25   6.3  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    25   8.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   8.4  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   8.4  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   8.4  

>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 365 VLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVLTSS 487
           +L T +   N+  PTS S+ SSKS+  T T+   T   T++
Sbjct: 587 LLRTHSLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATTT 627


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 299 SSSVGTGMLRQS*CETFPDGRSVLTTENASTNLFPPTSWSNQSSKSTMH--TVTSKSGTN 472
           SSS  +     +   +     S LT+ ++S++   P S S+ SS  + H  + +SKS + 
Sbjct: 360 SSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSS--RPASSSSHSSSLSSHKSSSSSKSSSA 417

Query: 473 VLTSSFFH 496
            ++S+F+H
Sbjct: 418 PVSSAFYH 425


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +2

Query: 299 SSSVGTGMLRQS*CETFPDGRSVLTTENASTNLFPPTSWSNQSSKSTMHTVTSKSGTNVL 478
           +SSV T +   +         S   + + S++   P+S S+  S S+   ++S S ++ L
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 479 TSSFF 493
           +SS F
Sbjct: 67  SSSSF 71


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = +1

Query: 364 GTYYGERVYKLIPPDQLVEPIFQEYYAHSDIKEWNKRAN 480
           G+Y  E+ Y+  PP++  + + ++ +  SD+++ +KR +
Sbjct: 122 GSYNEEKYYQ--PPEKFEQSLNEKCFHRSDVQKLSKRCD 158


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 271 LAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKL 396
           +A R++E+ + L +NR          P   +  YYGE++Y L
Sbjct: 135 IAAREQEFYRHLVKNRVTPQMESYSNP---IPDYYGEKIYSL 173


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 133 FSGYTMFAGFIGMTIGSIYLYNITY 207
           F+GY +  GF+G  IG     + TY
Sbjct: 136 FNGYAILFGFVGAWIGFFLFASDTY 160


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 229 IEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDV 348
           + +RS  + +   + AE+D EY  QL+  R+A  +  +D+
Sbjct: 178 LNLRS-HLQVQEQVYAEKDHEYSLQLQSYREAAEKAKQDI 216


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 382  RVYKLIP-PDQLVEPIFQEYYAHSDIKEW 465
            R   ++P P+++V  +   YY HS   EW
Sbjct: 1277 RFLAMMPHPERVVLKVANSYYPHSKASEW 1305


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 181 SIYLYNITYKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVP 351
           S+Y  +IT KR+L  ++   +A   +Y  L +       K    NR  E ++  DVP
Sbjct: 182 SLYRGDITAKRLLSGQVAQPAAADPLYRVLNS-------KIFNLNRGDEGDIYNDVP 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,344
Number of Sequences: 5004
Number of extensions: 48288
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)