Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_E12
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    94   1e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    27   1.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.2  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    26   4.2  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   5.5  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   5.5  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   7.3  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.3  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 49/106 (46%), Positives = 68/106 (64%)
 Frame = +3

Query: 102 PTNFQVNNKSXHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQ 281
           P  F    +  +L +HEYIS+ +LR  G+ VP+   A++ +EA K A +L   D+V+KAQ
Sbjct: 11  PRAFSPFLQKRNLALHEYISHDILRKFGVDVPRGAPARSGEEAEKVARDLKVTDLVVKAQ 70

Query: 282 VLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTG 419
           VLAGGRGKG F +GL+GGVR V     A   A +M+   L+T+QTG
Sbjct: 71  VLAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTG 116



 Score = 81.8 bits (193), Expect = 8e-17
 Identities = 38/58 (65%), Positives = 46/58 (79%)
 Frame = +1

Query: 418 GAAGRICNMVMVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAI 591
           G AG+ICN+V V ERKF R+EYY AI+M+R    P+I+AS QGGV+IE VAAENP AI
Sbjct: 116 GPAGKICNVVYVCERKFIRKEYYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAI 173


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 339 RMVNTPEVAGDIAGKML--KQLLVTKQTGGSRTNLQHGHGHREEV 467
           R+VN   +  D  G +   + +L+TK  GG+  N  +G+ H E +
Sbjct: 72  RVVNN--ILSDTYGSLYNPENILITKNGGGAGNNWANGYSHAERI 114


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 376  AISPATSGVLTIRTPPLSPFLKVPFPRPPA 287
            +++PAT+   T+  P  S F  VP P PPA
Sbjct: 1508 SVAPATAPSSTL-PPSQSSFAHVPSPAPPA 1536


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 160 VILYYGTMEFLYPNLMWPKP 219
           V++ +GT EF+ P L W  P
Sbjct: 123 VVVQFGTTEFVSPPLKWESP 142


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 168  LLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAG 293
            +L D G+  PK+    + DEA KF   +    +V  + VL+G
Sbjct: 1135 MLDDIGVDQPKWKELTSFDEADKFCDTVGYPVLVRPSYVLSG 1176


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 171 LRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGTFKN 320
           L +  IP+ +     T DEA++ A E  +  +++++    GG G G   N
Sbjct: 215 LNEINIPIAESVAVSTVDEALQ-AAEKVSYPVIIRSAYSLGGLGSGFANN 263


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 348 NTPEVAGDIAGKMLKQLLVTKQTGGSRTNLQ 440
           NT +  G +AG + ++ L TK    S+ NL+
Sbjct: 763 NTNKFLGSLAGNLPQESLTTKSKRKSKVNLE 793


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 424 LPPVCFVTRSCLSIFPAISPATSGVLTIRTPPLS 323
           LPP   ++ S  S FP + P +S   T   P LS
Sbjct: 6   LPPKPSISPSIASSFPTVKPFSSQNSTTSNPELS 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,120
Number of Sequences: 5004
Number of extensions: 60897
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)