Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_E12
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624... 87 2e-17
12_02_0299 - 17051570-17052474,17053542-17053755 31 0.81
09_06_0066 + 20641144-20641459,20642899-20643290,20643379-206438... 31 1.1
05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415... 31 1.1
10_08_0631 - 19435796-19436452,19437237-19438130 30 1.9
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 30 1.9
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184... 29 2.5
07_03_0967 - 23023019-23023158,23023676-23023767,23024474-230247... 29 3.3
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 29 3.3
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 29 3.3
06_03_0429 - 20701107-20701534,20701628-20701847 29 4.3
01_04_0106 + 16068729-16070651 29 4.3
10_01_0150 + 1747424-1747758,1748097-1748103 28 7.5
11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155... 27 9.9
04_04_1442 + 33628102-33628246,33628352-33628494,33628618-336288... 27 9.9
03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818... 27 9.9
>02_04_0655 +
24761323-24761424,24761565-24761675,24762361-24762472,
24763049-24763113,24763727-24763804,24764550-24764624,
24764747-24764899,24764988-24765122,24765325-24765495
Length = 333
Score = 86.6 bits (205), Expect = 2e-17
Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Frame = +3
Query: 138 LNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATEL--NTKDIVLKAQVLAGGRGKGT 311
LN+HEY L+ +GI VP+ A + +E + + K+IV+K+Q+LAGGRG GT
Sbjct: 28 LNIHEYQGAELMGKYGINVPRGAAAGSVEEVKNTLKNVFPSEKEIVVKSQILAGGRGLGT 87
Query: 312 FKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTG 419
FK+GL+GGV +V E A +A KML Q+LVTKQTG
Sbjct: 88 FKSGLQGGVHIVKAEE-AESLAAKMLGQILVTKQTG 122
Score = 70.9 bits (166), Expect = 8e-13
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +1
Query: 418 GAAGRICNMVMVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITY 597
G G+I + V + E+ E Y AI ++R+ GP+IIA S+GG +IED+A + PD I
Sbjct: 122 GPQGKIVSKVYLCEKLSLVNEMYFAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIK 181
Query: 598 EPIDIVSGITDDQICRVIE 654
PID+ GITDD +V++
Sbjct: 182 VPIDVFKGITDDDAAKVVD 200
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 421 PPVCFVT-RSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPA 287
PP+ F T R P ++P L PP+ PFL P P PPA
Sbjct: 215 PPIPFCTPRPWFPPIPFLTPPPPPFLPFPLPPI-PFLTPPSPPPPA 259
>09_06_0066 +
20641144-20641459,20642899-20643290,20643379-20643829,
20643985-20644046
Length = 406
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Frame = -1
Query: 431 RPAAPCLFCY*ELFKHLSCYITSNFRCVDHSNSTFKSILKGTFPSTTSK---NLCF*NYV 261
+ AAP L + S + +SNF V + SI G F S F +
Sbjct: 247 KAAAPGLVYFHIPLPEFSSFTSSNFTGVKQEGISSPSINSGFFASMVEAGDVKAAFIGHD 306
Query: 260 FGIEFCGKLN----CLILGFGHIKFG 195
+FCGKLN C GFG+ +G
Sbjct: 307 HVNDFCGKLNGIQLCYAGGFGYHAYG 332
>05_01_0498 +
4152729-4152820,4153316-4153425,4153840-4153877,
4154335-4154433,4154461-4157475
Length = 1117
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -2
Query: 304 FPRPPARTCAFRTMSLVLSSVANLIASSLVLATLNLGTGI 185
F P + A +SLVL+ LI+SS+VLA L L GI
Sbjct: 110 FQHPNTASVAQLMVSLVLAMAGKLISSSIVLALLPLFCGI 149
>10_08_0631 - 19435796-19436452,19437237-19438130
Length = 516
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 334 PPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSL-VLATLN 200
PP P L +P P PP R C T L L SV L+A++L VL L+
Sbjct: 10 PPPPPPLPLPLPLPP-RNCPLATAVLALLSV--LLATALWVLLVLS 52
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 367 PATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASS 221
PA V R PP P + V P PPA T A T + + N +A++
Sbjct: 84 PAAPAVTPARPPPQQPAVAVAAP-PPATTMATATEEVAAPATGNPMANA 131
>02_05_1000 +
33417357-33417600,33417692-33417744,33418376-33418413,
33418720-33419114,33420092-33420221,33420512-33421343
Length = 563
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 288 AGGRGKGTFKNGLKGGVRMVNTPEVAGDIA---GKMLKQLLVTKQTGGSRTNLQHGHGHR 458
+GGR G + GL G + + T +AGD A G ++ L T +L G G
Sbjct: 27 SGGRTAGPIRQGLHGDIGLQMTAAMAGDDANDGGHGWRRWLSTAAVAAVLLSL--GDGGD 84
Query: 459 EEVPTQGILRGNHDG 503
++ T+GI RG+ G
Sbjct: 85 DDKATEGI-RGSSAG 98
>07_03_0967 -
23023019-23023158,23023676-23023767,23024474-23024720,
23024822-23025134
Length = 263
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 331 PLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSLVLATLNLG 194
P + F ++P PRPP+R AF ++ A A+SL L + G
Sbjct: 7 PAATFPRLPPPRPPSRP-AFAAALAAAAAAAAAAAASLTLTAKSAG 51
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 479 SLRGNFLSVTMTMLQIRPAAPCLFCY*ELFKHLSCYITSNF 357
SLR + SV ++ Q+RP +P + + F Y+ NF
Sbjct: 82 SLRSHLASVLQSLSQVRPRSPASWIWISQFTRAQFYVHVNF 122
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 370 SPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSL 257
+PA S LT+ P SP +++ RPPART R + L
Sbjct: 5 TPAASATLTLLLPA-SPPMRLRARRPPARTSRSRPLLL 41
>06_03_0429 - 20701107-20701534,20701628-20701847
Length = 215
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -2
Query: 379 PAISPATS--GVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSLVLAT 206
PA SP +T TPP P P P P T S SS A A +L+LA
Sbjct: 145 PAASPIAKPPAAVTAATPPPPPPPPSPSPSPSPAPQEAATASAATSSSAATAAHALLLAA 204
Query: 205 L 203
+
Sbjct: 205 M 205
>01_04_0106 + 16068729-16070651
Length = 640
Score = 28.7 bits (61), Expect = 4.3
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = -2
Query: 463 SSR*P*PCCKFVLLPPVCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPAR 284
SS P P +LL P RS PA +PA + L PFL P P +
Sbjct: 2 SSSLPSPLLFLLLLLPFPAAVRSQ----PAAAPAPQQQCPLNFTALRPFLAQPLPPDDSA 57
Query: 283 TCAFRTMSLVLSSVANLIAS-SLVL 212
C S+ L +L A+ S VL
Sbjct: 58 RCLLAVQSVRLLLALHLAATGSFVL 82
>10_01_0150 + 1747424-1747758,1748097-1748103
Length = 113
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 364 ATSGVLTIRTPPLSPFLKVPFPRPPARTC 278
+T+G + PP SP L R P RTC
Sbjct: 66 STAGAGAVACPPTSPRLTAASARAPPRTC 94
>11_01_0198 -
1556215-1556298,1556412-1556580,1556666-1556921,
1557000-1557114,1557191-1557441,1557565-1557892,
1558197-1558358,1558846-1558985,1559325-1559436,
1560028-1560200,1560411-1560506,1560687-1560930
Length = 709
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +3
Query: 123 NKSXHLNVHEYISYTLLRDHGIPVPKFNVAKTK---DEAIKFATELNTKDIVLKAQVLAG 293
N NVH I++T HG+P P+ + ++ DE + + T + VLK ++
Sbjct: 121 NLDAAFNVHAGIAHTRWATHGVPAPRNSHPQSSGAGDEFLVVHNGIITNNEVLKETLIRH 180
Query: 294 G 296
G
Sbjct: 181 G 181
>04_04_1442 +
33628102-33628246,33628352-33628494,33628618-33628831,
33628925-33629159,33629285-33629372,33629526-33629885
Length = 394
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 415 VCFVTRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPA 287
VC + C+ FP + PA S V+ + T + +P P PA
Sbjct: 306 VCQIALLCVQPFPNLRPAMSEVVLMLTMKTTEQSVIPAPVRPA 348
>03_02_0406 +
8182870-8184262,8184376-8184452,8184809-8184920,
8185064-8185071,8185633-8186217
Length = 724
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 406 QNKQGAAG-RICNMVMVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENP 582
Q +Q G R+ M+ +KF ++ V ++ +GPV G + + ENP
Sbjct: 122 QKQQARVGTRVGCKAMLMIKKFGPDKWVVTKFIKIHNHGPVPPRKPHAGEHHDCDLMENP 181
Query: 583 DAITYEPID 609
+I +PID
Sbjct: 182 HSIEVDPID 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,266,835
Number of Sequences: 37544
Number of extensions: 419204
Number of successful extensions: 1399
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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