Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_E12
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical pr... 91 5e-19
U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical pr... 70 2e-12
Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical pr... 28 5.1
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 28 5.1
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 28 5.1
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 28 5.1
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 28 5.1
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 28 5.1
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 28 5.1
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z70034-11|CAA93853.2| 364|Caenorhabditis elegans Hypothetical p... 28 6.7
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 28 6.7
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 28 6.7
>Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical
protein F47B10.1 protein.
Length = 435
Score = 91.5 bits (217), Expect = 5e-19
Identities = 42/69 (60%), Positives = 53/69 (76%)
Frame = +1
Query: 427 GRICNMVMVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPI 606
G+ C VMV +R F RREYY +I ++R+ NGP++IASSQGGVNIE+VAA NPDAI PI
Sbjct: 120 GKKCEEVMVCKRLFTRREYYFSITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPI 179
Query: 607 DIVSGITDD 633
D+ GIT +
Sbjct: 180 DVNVGITKE 188
Score = 87.4 bits (207), Expect = 8e-18
Identities = 44/93 (47%), Positives = 61/93 (65%)
Frame = +3
Query: 138 LNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGTFK 317
L +HE+ +L+++ I VP F VA+ + A A + KD V+KAQVLAGGRGKG F
Sbjct: 24 LMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKDYVVKAQVLAGGRGKGRFS 83
Query: 318 NGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQT 416
+GL+GGV++V TP+ AG M+ L+TKQT
Sbjct: 84 SGLQGGVQIVFTPDEVKQKAGMMIGANLITKQT 116
>U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical
protein C50F7.4 protein.
Length = 415
Score = 69.7 bits (163), Expect = 2e-12
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Frame = +3
Query: 138 LNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGTFK 317
LN+ E+ S +L HG V F VA + EA + + V+KAQ+LAGGRGKG F
Sbjct: 20 LNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHEYVVKAQILAGGRGKGKFI 79
Query: 318 NGLK--GGVRMVNTPEVAGDIAGKMLKQLLVTKQT 416
NG K GGV + + A + +M+ + LVTKQT
Sbjct: 80 NGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQT 114
Score = 66.1 bits (154), Expect = 2e-11
Identities = 30/68 (44%), Positives = 46/68 (67%)
Frame = +1
Query: 445 VMVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGI 624
VM+ E +RE Y+A++M+R NGPV++AS GG++IE VA + P+ I PIDI G+
Sbjct: 124 VMIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGM 183
Query: 625 TDDQICRV 648
T+ Q ++
Sbjct: 184 TEGQSLKI 191
>Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical
protein K10D6.2c protein.
Length = 246
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 654 FDNTANLIISNTRNNIN 604
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical
protein K10D6.2b protein.
Length = 287
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 654 FDNTANLIISNTRNNIN 604
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical
protein K10D6.2a protein.
Length = 340
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 654 FDNTANLIISNTRNNIN 604
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 403 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 260
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 403 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 260
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 99 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 145
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 403 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 260
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 403 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 260
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 403 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 260
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 403 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 260
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 547 GVNIEDVAAENPDAITYEP 603
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>Z70034-11|CAA93853.2| 364|Caenorhabditis elegans Hypothetical
protein C18E9.2a protein.
Length = 364
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/95 (20%), Positives = 38/95 (40%)
Frame = +3
Query: 180 HGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPE 359
+G K + KT+D+ + ELN+K + +A+ L + + K G + +P+
Sbjct: 61 YGNKAKKDAMFKTRDDCFHYICELNSKQLFFRAKKLVAKKKENKDK-GNDSSAEVTKSPK 119
Query: 360 VAGDIAGKMLKQLLVTKQTGGSRTNLQHGHGHREE 464
+ K K+ + G ++ EE
Sbjct: 120 GVVEKRNKKAKEEETATEAEGDEKEVKKDEKKDEE 154
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 547 GVNIEDVAAENPDAITYEP 603
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 547 GVNIEDVAAENPDAITYEP 603
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,319
Number of Sequences: 27780
Number of extensions: 349149
Number of successful extensions: 936
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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