Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_E11
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   163   2e-41
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   111   1e-25
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.4  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   5.5  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   7.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.2  
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    25   9.5  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score =  163 bits (396), Expect = 2e-41
 Identities = 81/132 (61%), Positives = 100/132 (75%), Gaps = 3/132 (2%)
 Frame = +3

Query: 267 VLSEIQQRCFSVSPLTAA--AAQVAMSKFDKVP-LPYEKLTKNLEVVKKRLGRELTLSEK 437
           + ++   R FS +P+ A   A +VAMS F+K   + Y+++  NLE+VKKRL R LT SEK
Sbjct: 5   IFTQSTLRSFSCAPVAANIDAKKVAMSNFEKNKFINYQRIKDNLEIVKKRLNRPLTYSEK 64

Query: 438 ILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDH 617
           ILY HLDDP  Q+IERG SYL+LRPDRVA QDATAQMA+LQF+S+G+P VAVP T+HCDH
Sbjct: 65  ILYGHLDDPVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVPVTVHCDH 124

Query: 618 LIEAQVGGEXDL 653
           LIEA  GG  DL
Sbjct: 125 LIEAYEGGPIDL 136


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score =  111 bits (266), Expect = 1e-25
 Identities = 60/122 (49%), Positives = 80/122 (65%), Gaps = 7/122 (5%)
 Frame = +3

Query: 309 LTAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKRL-GRELTLSEKILYSHLDDPK------ 467
           L AA  Q   S+   V  PYEKL   L+ V+K L G++LTL+EK+LYSHL +P+      
Sbjct: 19  LVAARFQSTASRASYVTPPYEKLMGKLQQVRKFLPGQKLTLAEKVLYSHLVNPEESFSGV 78

Query: 468 GQEIERGASYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTIHCDHLIEAQVGGEX 647
                RG+ YL+L PDRVAMQDA+AQMA+LQF++ GL +  +P++IHCDHLI    G   
Sbjct: 79  SPSDIRGSLYLKLNPDRVAMQDASAQMALLQFMTCGLEKTMIPASIHCDHLIVGHRGANS 138

Query: 648 DL 653
           D+
Sbjct: 139 DI 140


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 263  GGTL*NPTKMFQRISIDRRRGPGGDVQVRQGTLA 364
            GG++ N  +   ++ ID  R PG ++ V QG+ A
Sbjct: 1226 GGSIINKIRKIAQVKIDVPRTPGDEIVVVQGSRA 1259


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 339 SKFDKVPLPYEKLTKNLEVVKKR 407
           +KFD+V +PY+ +  ++E   KR
Sbjct: 396 AKFDEVDMPYDTIWLDIEYASKR 418


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
            SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = +3

Query: 318  AAAQVAMSKFDKVPLPYEK-LTKNLEVVKKRLGRELTLSEKILYSHLDDPKGQEIERGAS 494
            AA  V  S    V LP    + +NLE  +K  G +    + +      + K + I     
Sbjct: 750  AARDVLASLIGNVVLPNTLVIEENLEQPRKTYGTKRNAQQALGKEGERENKEKRISYHTE 809

Query: 495  YLRLRPDRVAMQDATAQMAMLQFI 566
            YLRLR  R+  +     + + + +
Sbjct: 810  YLRLRQKRLDKEQQECDLLIAELL 833


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 82   WMKVQCDQALK*KKITSN*PMWHSXYLILKFF 177
            W+ V   QA +    TSN P+W    L+L FF
Sbjct: 2157 WLAVPYGQAWRFFWNTSNTPLWSIIILLLIFF 2188


>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 288 RCFSVSPLTAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKIL 443
           R   + P TA+  + +MS     P   E+  K  E V   +GR + L EK++
Sbjct: 129 RVIRIMPNTASRIRESMSVICPGPNATEEDIKFAEWVFNGIGRSMKLPEKLI 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,215
Number of Sequences: 5004
Number of extensions: 50172
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)