Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_E11
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1199 - 10313329-10314858                                         29   3.2  
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452...    28   5.6  
01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951           28   7.5  
05_07_0296 - 29061900-29061923,29062026-29062440,29062529-290625...    27   9.9  
04_04_0352 + 24619621-24619757,24620102-24620411,24621022-246214...    27   9.9  
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288...    27   9.9  

>06_01_1199 - 10313329-10314858
          Length = 509

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 267 PPLSCXPWPCKTLIQCAMVAGLQYI 193
           PP    PWP +  I   + AGL+Y+
Sbjct: 316 PPSPALPWPARLRIAVGIAAGLEYL 340


>12_01_0559 +
           4527769-4527924,4528038-4528129,4528799-4528905,
           4528987-4529042,4529196-4529346,4530223-4530528,
           4530753-4531597
          Length = 570

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 27/105 (25%), Positives = 48/105 (45%)
 Frame = +3

Query: 234 FCMARXSRTRVVLSEIQQRCFSVSPLTAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKRLG 413
           FC+A+  R  + LS I +RC     + AA   + M+  +      EKL K   +   ++ 
Sbjct: 342 FCLAKLLRKLLSLSIIDERCI----IDAALVLIEMATNN----VQEKLRKLPMLSLGKVA 393

Query: 414 RELTLSEKILYSHLDDPKGQEIERGASYLRLRPDRVAMQDATAQM 548
           R+ TL E    +   +   +++E   S L+ +  R+A  D  A +
Sbjct: 394 RDSTLPEPTKETESVEEATEKLEMFKSRLKQKDLRLAENDTGASL 438


>01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951
          Length = 563

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 372 FRKARVPCRTWTSPPGPRRRSME 304
           FR+AR   R +TSPP P+RR  E
Sbjct: 160 FREARASSRRFTSPP-PKRRGSE 181


>05_07_0296 -
           29061900-29061923,29062026-29062440,29062529-29062566,
           29062689-29062741,29062851-29063034,29064486-29064669,
           29064761-29064916,29064998-29065173,29065277-29065454,
           29066015-29066421
          Length = 604

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 426 LSEKILYSHLDDPKGQEIERGASYLRLRPDRVA-MQDATAQMAMLQFISSGLPRVAVPST 602
           LS  +L+S  DDP+  +    AS + L PDR+A +  A A        S G P  A    
Sbjct: 20  LSRALLFSQ-DDPEPVKRPDEASSISLPPDRIAIIAAAPAPSPATAAASDGSPAPA-QDE 77

Query: 603 IHCD 614
           + CD
Sbjct: 78  VRCD 81


>04_04_0352 +
           24619621-24619757,24620102-24620411,24621022-24621429,
           24621773-24622357
          Length = 479

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/82 (28%), Positives = 38/82 (46%)
 Frame = +3

Query: 270 LSEIQQRCFSVSPLTAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKRLGRELTLSEKILYS 449
           ++E QQ+   V+ +  +    A  K  K      +  K+L   KKR  + +T  EKILY 
Sbjct: 87  IAEPQQKQEDVALVDESGRPKAKRKKLKGRRAVTRFLKSLRWKKKREFQRMTAEEKILYK 146

Query: 450 HLDDPKGQEIERGASYLRLRPD 515
            L   + +E    A+  ++ PD
Sbjct: 147 -LKLARNKEERLVAALTKIEPD 167


>03_02_0936 -
           12528336-12528379,12528516-12528602,12528696-12528809,
           12528895-12529120,12529200-12529523,12529603-12529773,
           12529870-12530100,12530291-12530479,12531176-12531178
          Length = 462

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 312 TAAAAQVAMSKFDKVPLPYEKLTKNLEVVKKR 407
           TAA A   M+ F+ VPLPY+      E+ +KR
Sbjct: 19  TAAVAPPRMADFNHVPLPYDG-PSAAEIARKR 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,008,665
Number of Sequences: 37544
Number of extensions: 366220
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)