Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_E10
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 268 LNLRKDLSASVSACRSARE 212
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 76  WVDNLLLNTFFTAXRQAFIF 17
           +++++ LNT++   RQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 76  WVDNLLLNTFFTAXRQAFIF 17
           +++++ LNT++   RQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 103 QGSVYVQQEASRHH 144
           Q S+Y+QQ+  +HH
Sbjct: 94  QHSLYLQQQQQQHH 107


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 613 AFSMSLAMES-GINLFTTSLSSELVTSRVM 527
           A S+S   E  G +L  T+LSS LV SRV+
Sbjct: 599 ASSVSAGEEGLGNSLAITALSSILVLSRVI 628


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,590
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)