Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_E08
(523 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 37 0.011
08_01_0202 - 1638978-1639571 36 0.020
11_06_0416 + 23307984-23308281,23310083-23310900 31 0.74
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 30 0.98
01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728 29 2.3
08_01_0229 + 1834102-1834358,1834442-1834901 28 5.2
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 28 5.2
04_04_1386 - 33166470-33166705,33166811-33167087,33167240-331675... 28 5.2
10_08_1055 + 22587122-22587501,22587578-22588097 27 6.9
06_03_0189 - 17697779-17698939 27 6.9
04_04_1019 + 30166514-30166585,30167207-30167841,30168505-301686... 27 6.9
02_05_0410 + 28744716-28744841,28745361-28745965,28746151-287462... 27 6.9
02_02_0363 + 9446055-9446524,9446658-9446771,9446856-9447281,944... 27 6.9
09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112 27 9.1
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 27 9.1
>02_01_0158 - 1103461-1104186
Length = 241
Score = 36.7 bits (81), Expect = 0.011
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 285 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGP 422
D+FVHQ++I + RS+ +GE VEFA+ E G +A VTGP
Sbjct: 31 DLFVHQSSIKADG----FRSLAEGEQVEFAISESEDGRTKAVDVTGP 73
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 203 AEKVSGTVKWFNVKSGYGFINRND 274
A + GTVKWFN G+GFI+ +D
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDD 27
>08_01_0202 - 1638978-1639571
Length = 197
Score = 35.9 bits (79), Expect = 0.020
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +2
Query: 203 AEKVSGTVKWFNVKSGYGFINRND 274
+E+V GTVKWF+ G+GFI +D
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDD 26
Score = 34.3 bits (75), Expect = 0.060
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 285 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGP 422
D+FVHQ+++ + RS+ DG+ VEF+V +G G +A VT P
Sbjct: 30 DLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAP 72
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 506 HLDEGNIGGGSHGACLQHKVSLLLAHHPGT 417
HLD+ N+ G +G + K+SLL A H G+
Sbjct: 89 HLDDPNVDGVRNGVRARFKISLLAAAHDGS 118
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 419 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHKHILP 279
T N ++ FLP G + L + D ++ W ++ + SL HK + P
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHKSMSP 337
>01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728
Length = 316
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 404 SWCYWSPGGEPVKGSPYAADKRRGYHR 484
SW + G +P+KGSPY RGY+R
Sbjct: 100 SWAWRKYGQKPIKGSPYP----RGYYR 122
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 100 GVIGERRWWQRW 65
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/73 (27%), Positives = 27/73 (36%)
Frame = +1
Query: 301 RLPSPVTTHVRLCARSATERRWSLPWLPGRKALKQLVLLVPGW*ASKRLTLCCRQAPWLP 480
R P P T R A + R P R +L++ P +++R P P
Sbjct: 13 RSPDPAATTPRQAAPGSRHRT------PRRGGRGRLLVQSPSLASARRAAAAAAPLPVAP 66
Query: 481 PPIFPSSRWRTXR 519
PP P RW R
Sbjct: 67 PPDTPPLRWPAAR 79
>04_04_1386 -
33166470-33166705,33166811-33167087,33167240-33167508,
33167658-33167882,33168020-33168080
Length = 355
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 494 GNIGGGSHGACLQHKVSLLLAHHPGTSNTSCFKAFLPGNHGKLHRLS 354
GN+G HG+ LQ K+S L H NT+ F + + G H++S
Sbjct: 239 GNMGAYLHGSNLQQKLSHLDYVHHVDLNTA-FSNIVNPDQGSKHKVS 284
>10_08_1055 + 22587122-22587501,22587578-22588097
Length = 299
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 407 WCYWSPGGEPVKGSPYAADKRRGYHR 484
W + G +P+KGSPY RGY+R
Sbjct: 155 WAWRKYGQKPIKGSPYP----RGYYR 176
>06_03_0189 - 17697779-17698939
Length = 386
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 407 WCYWSPGGEPVKGSPYAADKRRGYHR 484
W + G +P+KGSPY RGY+R
Sbjct: 219 WAWRKYGQKPIKGSPYP----RGYYR 240
>04_04_1019 +
30166514-30166585,30167207-30167841,30168505-30168645,
30169604-30170300
Length = 514
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 407 WCYWSPGGEPVKGSPYAADKRRGYHR 484
W + G +P+KGSPY RGY+R
Sbjct: 266 WAWRKYGQKPIKGSPYP----RGYYR 287
>02_05_0410 +
28744716-28744841,28745361-28745965,28746151-28746270,
28746597-28746737,28748626-28749370
Length = 578
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 407 WCYWSPGGEPVKGSPYAADKRRGYHR 484
W + G +P+KGSPY RGY+R
Sbjct: 314 WAWRKYGQKPIKGSPYP----RGYYR 335
>02_02_0363 +
9446055-9446524,9446658-9446771,9446856-9447281,
9447812-9447893,9447964-9448020,9448633-9448881,
9448978-9449109,9449163-9449291
Length = 552
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 407 WCYWSPGGEPVKGSPYAADKRRGYHR 484
W + G +P+KGSPY RGY+R
Sbjct: 178 WAWRKYGQKPIKGSPYP----RGYYR 199
>09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112
Length = 254
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 197 VIAEKVSGTVKWFNVKSGYGFINRNDTKVRCVCAS 301
+++E+V GTVKWF+ + + VCA+
Sbjct: 1 MVSERVKGTVKWFDATAAMEATAATAGEEAAVCAT 35
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3
Query: 303 TAIARNNPRKAVRSVGDGEAVEFAVVAG 386
TAI N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,568,363
Number of Sequences: 37544
Number of extensions: 254309
Number of successful extensions: 899
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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