Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_E02
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   1.7  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.2  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   3.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   3.9  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   3.9  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +3

Query: 15   VSSEIARCGSSSSF*FIIKLTNILYNKTKWPLSRECVSPTRSPXKNITMRGNVPKTTKEK 194
            +S ++ +    S+F    KL N L   T  P ++       S    + +   +   T   
Sbjct: 1888 MSRDLGKANGKSNF-LSSKLANALSFSTTHPATKRWERREISNFNYLQIVNTLAGRTYND 1946

Query: 195  EDQYPVAPWLLA 230
              QYPV PW++A
Sbjct: 1947 LTQYPVFPWVIA 1958


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 191 KRRPISCGTLAPCSLHLRSVWLCCVPDNPINK 286
           ++R I C  L PC   ++S   C  P++PI +
Sbjct: 23  RQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRR 54


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 563 KRDXNSSKIXQSIPQRP**PYVSASRFNPVSVKETSSHDCTVKGTNGR 420
           +R   S KI + IP++   P +S+ +F+  S +  +    +    NGR
Sbjct: 57  QRSFQSLKINKGIPEKHKIPLISSKQFSVTSKRSQNGSSGSNSDANGR 104


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 272 YLEH-SRATHYEDEESKEP 219
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 203 ISCGTLAPCSLHLRSVWLCCVPDNPINKTSLNHED 307
           I CG LA   + L  V L  VPDNP     L  ED
Sbjct: 227 IICGVLA---IFLGFVILAVVPDNPFKAWFLTEED 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,093
Number of Sequences: 5004
Number of extensions: 50504
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)