Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_E01
(458 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 178 2e-45
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 178 2e-45
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 175 1e-44
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 66 9e-12
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 66 9e-12
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 62 1e-10
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 31 0.53
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 28 2.8
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 28 2.8
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 28 2.8
Z70686-9|CAA94614.3| 915|Caenorhabditis elegans Hypothetical pr... 27 5.0
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 27 5.0
U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclas... 27 6.6
U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclas... 27 6.6
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 8.7
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 27 8.7
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 27 8.7
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 27 8.7
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 27 8.7
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 27 8.7
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 27 8.7
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 8.7
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 8.7
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 178 bits (433), Expect = 2e-45
Identities = 80/98 (81%), Positives = 90/98 (91%)
Frame = +3
Query: 165 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 344
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 345 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYXGKISE 458
N+W+ AVT+QNVNAAMVFEFL + D MQSY GK++E
Sbjct: 61 GNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNE 98
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 178 bits (433), Expect = 2e-45
Identities = 80/98 (81%), Positives = 90/98 (91%)
Frame = +3
Query: 165 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 344
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 345 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYXGKISE 458
N+W+ AVT+QNVNAAMVFEFL + D MQSY GK++E
Sbjct: 61 GNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNE 98
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 175 bits (427), Expect = 1e-44
Identities = 79/98 (80%), Positives = 89/98 (90%)
Frame = +3
Query: 165 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 344
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 345 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYXGKISE 458
N+W+ AVT+QNVNAAMVF FL + D MQSY GK++E
Sbjct: 61 GNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNE 98
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 66.5 bits (155), Expect = 9e-12
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +3
Query: 177 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS--PVTNIARTSFFHIKRAN 350
+F+ + KG+ +ISR YR DI A+D F ++++ +++ S PV T+F IK N
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 351 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYXGKISE 458
I+L + + NVN M+ FL K ++V Y + E
Sbjct: 65 IYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEE 100
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 66.5 bits (155), Expect = 9e-12
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +3
Query: 177 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS--PVTNIARTSFFHIKRAN 350
+F+ + KG+ +ISR YR DI A+D F ++++ +++ S PV T+F IK N
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 351 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYXGKISE 458
I+L + + NVN M+ FL K ++V Y + E
Sbjct: 65 IYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEE 100
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 62.5 bits (145), Expect = 1e-10
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Frame = +3
Query: 168 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHIKR 344
I GLF+ + KG V+ISR YR D+ + ++ F ++ + SPV S+ +IK
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYIKY 62
Query: 345 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYXGKISE 458
N++L ++K+N N +V L KI++V Y + E
Sbjct: 63 MNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEE 100
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
C14C10.5 protein.
Length = 1908
Score = 30.7 bits (66), Expect = 0.53
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 210 ISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFF 332
+ R++RDDIG V++ N I R++ ++ + + FF
Sbjct: 1761 VFRIHRDDIGMILVNSLNDNQIEVRERATDALSTLLQAKFF 1801
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 150 EASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH 278
+++P I +F ++ G S Y DDI + A+D FRV H
Sbjct: 264 QSNPVDIAKVFKPDYVGGNEYSFEYSDDIHKFAIDCFRVGESH 306
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 248 CGRIQSECDPCSPAGAITCYQHCTHIFLPYQACKYLAGSSHKAKCERGH 394
C + Q C+PA +CYQ C+ L C L S + C++ +
Sbjct: 361 CIQQQQPMQQCAPACTQSCYQSCSTAQLVQMPC--LTQSVNSCSCQQNY 407
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 248 CGRIQSECDPCSPAGAITCYQHCTHIFLPYQACKYLAGSSHKAKCERGH 394
C + Q C+PA +CYQ C+ L C L S + C++ +
Sbjct: 362 CIQQQQPMQQCAPACTQSCYQSCSTAQLVQMPC--LTQSVNSCSCQQNY 408
>Z70686-9|CAA94614.3| 915|Caenorhabditis elegans Hypothetical
protein R10H10.7 protein.
Length = 915
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 348 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 437
++++ A+ + + A V FLLKI DV++S
Sbjct: 113 HMYMDAIPRDSPGATKVLNFLLKIFDVLKS 142
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 27.5 bits (58), Expect = 5.0
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = -1
Query: 383 HILLCDCCQPNICTLDMEERCACNVGNR*SHLLASMDHIHSECVHSITTNIISVDSRDQH 204
H L + N L + C GNR +H L ++ + +C+ + I + R
Sbjct: 133 HCLKSEDLTGNYIALLILRGCPIIFGNRLAHFLPTLKVVLEKCMATPDLQIKATAVR-AV 191
Query: 203 LAFMVVNEQASDHCR*GLTLFQNWFQ-CN 120
+AF V N++ D R +L N Q CN
Sbjct: 192 IAFAVDNDEEKDVVRLMTSLVPNVLQVCN 220
>U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclase
protein 7, isoforma protein.
Length = 1045
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 252 DAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVM 431
+ RV IH R +P+T RTS A+I + + ++N+ + F F ++ D +
Sbjct: 33 NVIRVGFIHCRDFQSAPITVGYRTS---AAAASIAVDRLKRENLMSGWEFNFTIEFDDCV 89
Query: 432 QS 437
+S
Sbjct: 90 ES 91
>U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclase
protein 7, isoformb protein.
Length = 1111
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 252 DAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVM 431
+ RV IH R +P+T RTS A+I + + ++N+ + F F ++ D +
Sbjct: 33 NVIRVGFIHCRDFQSAPITVGYRTS---AAAASIAVDRLKRENLMSGWEFNFTIEFDDCV 89
Query: 432 QS 437
+S
Sbjct: 90 ES 91
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +2
Query: 272 DPCSPAGAITCYQ--HCTH-IFLPYQACKYLAG 361
D C+P+ CYQ HC + L ACK + G
Sbjct: 1108 DQCNPSNPSACYQNAHCVYDAILNAHACKCVDG 1140
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 371 CDCCQPNICTLDMEERCACN 312
CD C+PN + E C CN
Sbjct: 685 CDRCKPNFYNFPICEECNCN 704
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 371 CDCCQPNICTLDMEERCACN 312
CD C+PN + E C CN
Sbjct: 685 CDRCKPNFYNFPICEECNCN 704
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 303 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 437
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 394
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 303 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 437
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 340 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 384
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 303 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 437
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 394
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 303 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 437
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 394
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 303 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 437
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 394
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 303 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 437
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+
Sbjct: 340 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQT 384
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 371 CDCCQPNICTLDMEERCACN 312
CD C+PN + E C CN
Sbjct: 685 CDRCKPNFYNFPICEECNCN 704
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 371 CDCCQPNICTLDMEERCACN 312
CD C+PN + E C CN
Sbjct: 685 CDRCKPNFYNFPICEECNCN 704
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,771,869
Number of Sequences: 27780
Number of extensions: 224279
Number of successful extensions: 625
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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