Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_D24
         (311 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     97   2e-21
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     96   6e-21
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    94   2e-20
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123...    27   4.1  
08_02_1440 - 27113396-27113418,27113976-27114102                       26   7.2  
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753...    26   7.2  
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    25   9.5  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 43/63 (68%), Positives = 55/63 (87%)
 Frame = +3

Query: 51  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 230
           MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60

Query: 231 PPG 239
           PPG
Sbjct: 61  PPG 63


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 42/63 (66%), Positives = 54/63 (85%)
 Frame = +3

Query: 51  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 230
           MP++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 231 PPG 239
           PPG
Sbjct: 61  PPG 63


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 41/62 (66%), Positives = 53/62 (85%)
 Frame = +3

Query: 54  PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 233
           P++I +IKDFL+ ARRKDA+SV+IK+  + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91

Query: 234 PG 239
           PG
Sbjct: 92  PG 93


>05_01_0178 -
           1235546-1235756,1235869-1235945,1236194-1236347,
           1237067-1237216,1237363-1237484,1237806-1237910,
           1237986-1238213
          Length = 348

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +3

Query: 51  MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 212
           MP +   +   L+  + +   +V ++    N + +V C ++L+  +I++K  AE
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223


>08_02_1440 - 27113396-27113418,27113976-27114102
          Length = 49

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +3

Query: 201 EKAEKLKQSLPPGS 242
           E A KLKQ LPPGS
Sbjct: 25  ENANKLKQFLPPGS 38


>02_04_0226 + 21073967-21074179,21074711-21074832,21074926-21075370,
            21075453-21075559,21075656-21076463,21076691-21077128,
            21077349-21077537,21077616-21077843,21077943-21078140,
            21078304-21078379,21078452-21078593,21078749-21079238
          Length = 1151

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 136  LRMSSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQGLQVKE 255
            LR SSS      + +P    T+ R + L+RV+L+ LQ  +
Sbjct: 1040 LRSSSSSSSGSTTGSPSDERTESRKQILARVFLKSLQTDD 1079


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 72  IKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVIT 194
           ++  +I+A +     V I   P  VK    C++F Y +V+T
Sbjct: 55  LQRLIIEASQNGTDEVYIHDIPGGVKIFEICAKFCYGMVVT 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,941,992
Number of Sequences: 37544
Number of extensions: 109406
Number of successful extensions: 258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)