Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_D24
(311 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical pr... 113 2e-26
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 30 0.39
AC087081-10|AAK66035.1| 326|Caenorhabditis elegans Hypothetical... 27 2.1
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 27 2.8
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical... 27 3.6
AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical ... 27 3.6
AF106575-14|AAC78163.2| 365|Caenorhabditis elegans Serpentine r... 26 4.8
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 25 8.4
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 25 8.4
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 25 8.4
>Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical
protein C06B8.8 protein.
Length = 70
Score = 113 bits (273), Expect = 2e-26
Identities = 51/63 (80%), Positives = 58/63 (92%)
Frame = +3
Query: 51 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 230
MP+EIK+IKDFL+KARRKDAKSVKIKKN N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60
Query: 231 PPG 239
PPG
Sbjct: 61 PPG 63
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 29.9 bits (64), Expect = 0.39
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +1
Query: 1 SFXDPLTVLVENYSSSTCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRFDAQGSCT 180
SF DPL V ++ K G+ NR++ T+ S+S+ A S
Sbjct: 164 SFVDPLYSKVGEVQGTSANRDRKYDYPI---FSGRPQNRTRPDETVYQSASQIYAPNSED 220
Query: 181 PWSSLTKRRLRN 216
P+SS+T R RN
Sbjct: 221 PYSSITSERGRN 232
>AC087081-10|AAK66035.1| 326|Caenorhabditis elegans Hypothetical
protein Y82E9BL.8 protein.
Length = 326
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 303 VIFYFFYFINLVTSLYFFNLETLEVNS 223
VIF+ F F +L++ L +FN E +E N+
Sbjct: 172 VIFWSFSFNDLLSILPYFNAEDMEFNN 198
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 177 YTLVITDKEKAEKLKQSLPPGSP 245
Y + IT K AEKL + +PP +P
Sbjct: 299 YVMTITGKGPAEKLMKEVPPVAP 321
>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
protein Y75B8A.26 protein.
Length = 1144
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 81 FLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 191
F K+R+ + K K++KN ENV+ R + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559
>AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical
protein F52C6.11 protein.
Length = 304
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 42 VFNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRCSRFLYTL 185
+++MP IK ++FL+ + K K +K+ K + K C + TL
Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASCLAKINTL 274
>AF106575-14|AAC78163.2| 365|Caenorhabditis elegans Serpentine
receptor, class w protein98 protein.
Length = 365
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 303 VIFYFFYFINLVTSLYFFNLETLEVNS 223
VIF+ F F ++++S Y+F +E S
Sbjct: 164 VIFWCFVFSSMLSSFYYFRYNIIEKGS 190
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 45 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 152
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 45 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 152
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 45 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 152
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 148 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,209,916
Number of Sequences: 27780
Number of extensions: 104346
Number of successful extensions: 346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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